Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0539 ATGGGTTTTAATGATAACTCTAACACAGGGATTCAATTAGGTCTTGATCTTAGTCTTGGCCAACACGATCATCACAAGCAAAGAGATCAAAGCCACAAAGAAAGAAAGGATGGTCCATCAACGTGTAACAAGGCATACCCATCTCTAACATTAGGACTAAGTGATCATGGTGATGAAGCAAATAACCAACCAAATTCAAAGACTGAAATCTCTTCTCGCAGCGCGGTTTCTTCATTAGTTTCCAACTCTTCAAGTATCAAGAGGAAGAGAGACAATTTTTTAGGTGAAGACTTTGAGGTAGAGGTACAAAAGGTTACATCAAACTCAAAGGGTGGTGATGTTGAAGATGAAGTATGTAACACAAGGAAGAAACTTAGGCTCACAAAAGAACAATCTGCAGTGTTAGAAGAAAACTTCGTAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAGCTAGCAATGAATCTAAATTTGAGGACGAGACAAGTAGAGGTGTGGTTTCAAAATAGAAGAGCGAGGACAAAACTAAAGCAAACAGAAACTGATTGTGAGTTACTGAAGAAGTACTGTGAGACTCTAACAGAAGAGAACAAGAGGCTGAAAAAGGAGCTACAAGAACTTAAATCAATTGAAACTTCACCAGGACCCTTTCCTATGCAGATTCCATCAGCAACCCTTATAATATGCCCTTCTTGTGAGAGAATTTGCAATGGTAACATCAATGGCTATTCACCCATGACAATGTTGCATATTGGCTCAAAGGCCCATCATCACTTATATACAGAAAATATTCATTCACCCACTCATCTTGGTCCTGATGAGAGAAATCATTGCATGATCTTCAACTAA 852 0.3885 MGFNDNSNTGIQLGLDLSLGQHDHHKQRDQSHKERKDGPSTCNKAYPSLTLGLSDHGDEANNQPNSKTEISSRSAVSSLVSNSSSIKRKRDNFLGEDFEVEVQKVTSNSKGGDVEDEVCNTRKKLRLTKEQSAVLEENFVEHSTLNPKQKQELAMNLNLRTRQVEVWFQNRRARTKLKQTETDCELLKKYCETLTEENKRLKKELQELKSIETSPGPFPMQIPSATLIICPSCERICNGNINGYSPMTMLHIGSKAHHHLYTENIHSPTHLGPDERNHCMIFN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0539 283 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Lan3g0539 283 Coils Coil 177 214 - -
Lan3g0539 283 MobiDBLite consensus disorder prediction 21 82 - -
Lan3g0539 283 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Lan3g0539 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 12 249 - -
Lan3g0539 283 SUPERFAMILY Homeodomain-like 117 179 IPR009057 -
Lan3g0539 283 MobiDBLite consensus disorder prediction 21 40 - -
Lan3g0539 283 CDD homeodomain 122 179 IPR001356 GO:0003677
Lan3g0539 283 PANTHER - 12 249 - -
Lan3g0539 283 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Lan3g0539 283 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Lan3g0539 283 SMART HOX_1 120 182 IPR001356 GO:0003677
Lan3g0539 283 Pfam Homeobox associated leucine zipper 178 210 IPR003106 GO:0006355|GO:0043565
Lan3g0539 283 MobiDBLite consensus disorder prediction 55 82 - -
Lan3g0539 283 Gene3D - 126 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0539 Lan-Chr3 5511154 5512849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0539 1 236 Homeobox Transcription Factor Family AT4G37790 49.593 3.18e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan3g0539 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0539 K09338 - gmx:100807072 291.967