Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0520 ATGGCATTTGCAGGAACAACCCAAAAATGTATGGCTTGTGAGAAAACAGTTTACTTGGTTGATAAGTTAACTGCAGATAACAGAGTGTTCCATAAAGCTTGCTTTAGATGCCACCACTGCAAAGGAACTCTTAAGCTAAGCAACTACAACTCTTTTGAGGGGGTTCTTTACTGCAGGCCACACTTTGACCAAATATTCAAAAGAACTGGTAGCCTTGACAAGAGCTTTGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCAGTGATAATGAGAAACCTGCAGCAGCCAAAGCCTCAAGTATGTTTGGTGGAACCAGGGACAAATGTGCTGGTTGTCAGAAAACTGTGTATCCCACTGAAAAGGTTACAGTGAATGGAACTCCTTATCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATTAGTCCTTCCAATTACATTGCACATGAGGGAAAACTCTACTGCAAACACCATCATATACAACTTATCAAGGAGAAGGGTAATTTAAGTCAGCTTGAAGGTGATCAAGAGAAGAATGCAGTGCATGAGAAAATCAATGGCGAAGTTGCGGCCGAGACATGA 591 0.4129 MAFAGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQIFKRTGSLDKSFEGTPKIAKPEKTSDNEKPAAAKASSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDQEKNAVHEKINGEVAAET* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0520 196 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lan3g0520 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan3g0520 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lan3g0520 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lan3g0520 196 SMART lim_4 109 161 IPR001781 -
Lan3g0520 196 SMART lim_4 9 61 IPR001781 -
Lan3g0520 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan3g0520 196 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Lan3g0520 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lan3g0520 196 MobiDBLite consensus disorder prediction 79 93 - -
Lan3g0520 196 Pfam LIM domain 10 63 IPR001781 -
Lan3g0520 196 Pfam LIM domain 110 164 IPR001781 -
Lan3g0520 196 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Lan3g0520 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan3g0520 196 MobiDBLite consensus disorder prediction 77 98 - -
Lan3g0520 196 CDD LIM2_SF3 110 170 - -
Lan3g0520 196 Gene3D Cysteine Rich Protein 4 74 - -
Lan3g0520 196 Gene3D Cysteine Rich Protein 105 174 - -
Lan3g0520 196 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0520 Lan-Chr3 4955578 4958430 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan3g0520 LIM 1.5e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0520 K09377 - gmx:100499957 386.341