Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0480 ATGGTTGTTAGTTTTAGTCCTAGTACACTTATCATGATGTCATTCAAGAGTATTTTTCGCGAGCTTAAGGATATGGGAGAGGGCATTGGAAACATGTATCGAAAAGGGGCAGAAGCCAAGCATATGCATCTCTATGGAAAATCTCACATTGCACCTGAATGTTCCTCGCCAGTATTGTCGTCGTCATCATCATCGTCATTATCGTCAATAGTTGGTGAGCAAAGTAGGTGGACTAACTTACCACCTGAGTTGCTATTAGACATAATTCAAAGGGTAGAAGCCAGTGAAATTTCTTGGCCTGCAAGGAAAGTACTTGTAGCATGTGCCTCAGTTTGTAGGTCATGGAGGGAAATAACAAAAGGTGTGGTTAAAACACCGGAACAGTGTGGTTGGATCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGACACTCCAATCCAGTGTTTTATAAAGAGAGAAAGGGTGACTTCTACATACCGATTATATCTCGGTCTGAGCCCTGCGCTTTCGGGTGAAATGAGCAAACTGCTATTGGCAGCAAAGAAGATTAAAAGGTTAACATGTACAGAATTTTTTATATCATTGGTTGCCGATGATTTCTCTCGAGCTAGCAATACTTACATTGGAAAGCTGAGGTCTAACTTTCTTGGAACCAAGTTTACGATCTTGGATGGCGAGCCTCCACATGATTCTGCACTTCCATCGAATTGCAAGTCTCAGCGAAGCGTCCATTTGAAGCAAGTACTTCAAAGAGTTGCTGCTGCTAACTATAACATGGGTACGGTATCATATGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGAGAATGTGTTGTACAATGCACTTAATCCCCATATCTGCAATCAAAGAAGGAGGGGCTGCACCTACTCCTTTGAAGTTTACCAAGTGCTATAATGAGCATGCAACCCCCTTGCCGATTTCGAAAGGAAAGAAGCAAGGAATTGAATTTGCTTCAGGTGGTACTAATACTACTACAGAATCAACCCATAGTGCAAGGCAACCATTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTACAGTGGCGTCCGTGAAGAACTTCCAGCTTGTAGCAGTTGCAGAACCTTCGGAAAATGTACCGGTGGCAGAACAAGAGAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTTTCGGCTTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACAAAACCAGCTTGTGAATGA 1314 0.4277 MVVSFSPSTLIMMSFKSIFRELKDMGEGIGNMYRKGAEAKHMHLYGKSHIAPECSSPVLSSSSSSSLSSIVGEQSRWTNLPPELLLDIIQRVEASEISWPARKVLVACASVCRSWREITKGVVKTPEQCGWITFPISLKQPGPRDTPIQCFIKRERVTSTYRLYLGLSPALSGEMSKLLLAAKKIKRLTCTEFFISLVADDFSRASNTYIGKLRSNFLGTKFTILDGEPPHDSALPSNCKSQRSVHLKQVLQRVAAANYNMGTVSYELNVLRTRGPRRMCCTMHLIPISAIKEGGAAPTPLKFTKCYNEHATPLPISKGKKQGIEFASGGTNTTTESTHSARQPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAVAEPSENVPVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0480 437 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Lan3g0480 437 Gene3D - 72 122 - -
Lan3g0480 437 PANTHER TUBBY-RELATED 13 437 - -
Lan3g0480 437 ProSitePatterns Tub family signature 1. 365 378 IPR018066 -
Lan3g0480 437 Gene3D Tubby Protein; Chain A 135 437 IPR025659 -
Lan3g0480 437 Pfam Tub family 138 432 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 193 209 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 209 233 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 258 285 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 347 364 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 365 381 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Lan3g0480 437 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Lan3g0480 437 Pfam F-box domain 77 123 IPR001810 GO:0005515
Lan3g0480 437 SUPERFAMILY Tubby C-terminal domain-like 126 437 IPR025659 -
Lan3g0480 437 PANTHER TUBBY-LIKE F-BOX PROTEIN 13 437 - -
Lan3g0480 437 SUPERFAMILY F-box domain 72 149 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0480 Lan-Chr3 4419965 4422740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0480 46 437 TUB Transcription Factor Family AT1G47270 62.278 2.85e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan3g0480 Tub 7.7e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0480 K19600 - gmx:100796250 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0568 10 4742914 4746367 Lan3g0480 3 4419965 4422740 LSH