Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0460 ATGGGGACAAAGGCAAAGAAAGCTATGAACAAGAATCTGAAAAAGGCTAATTCTAAAAAGCCATCTGATGGTGCTGATTTTTTGCCTTTGGAAAGTGGTTCTGCTCGCAAAATTCACGAAGAAAAACAACCAAGGGAGGGTACTGCTACGGTTTTGTATGTTGGTAGGATTCCACATGGGTTCTATGAGAAGGAGATGAATGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCAAGAAATAAAAAGACAGGACAATCAAAGCATTATGGTTTCATAGAATTCGAGTCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTACCTGCTTTTTGAACACCTTCTCCAGGTTCACTTGATACCTCCAGAGCATGTTCATCCAAAATTATGGAGAGGTTTTAATTACCATTACAAGCCACTGGACACTGTCGAAATTGAACGAGAGCGACATGACAAGGAAAGAACATTGGAAGAACACAATGAGTTGGTGGAAAAGATTCTGAAGCGTGACAAAAAACGACGGAAAATCATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGTAACGTTCAGCCTGCTGCAAAGAAAATAAAGTTTGAAGACTAA 633 0.3965 MGTKAKKAMNKNLKKANSKKPSDGADFLPLESGSARKIHEEKQPREGTATVLYVGRIPHGFYEKEMNGYFGQFGTIKRLRIARNKKTGQSKHYGFIEFESPEVAKIVADTMHNYLLFEHLLQVHLIPPEHVHPKLWRGFNYHYKPLDTVEIERERHDKERTLEEHNELVEKILKRDKKRRKIIEAAGIDYECPEIVGNVQPAAKKIKFED* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0460 210 Gene3D - 3 125 IPR012677 -
Lan3g0460 210 SUPERFAMILY RNA-binding domain, RBD 44 138 IPR035979 GO:0003676
Lan3g0460 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Lan3g0460 210 Coils Coil 148 175 - -
Lan3g0460 210 MobiDBLite consensus disorder prediction 1 43 - -
Lan3g0460 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Lan3g0460 210 CDD RRM_NIFK_like 51 124 - -
Lan3g0460 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Lan3g0460 210 PANTHER - 1 209 - -
Lan3g0460 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0460 Lan-Chr3 4186265 4189515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0460 50 123 Eukaryotic Initiation Factors Gene Family AT1G71770 31.081 3.27e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0460 K14838 - gmx:100778780 338.576