Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0438 ATGGATCACCGAACACTATTATTTTCATTCTTATTAACACTCCATCTATCAGGAGTAATTTCAACAACATTCAATATAGTTAACAAATGCGAGTACACAGTGTGGCCAGGGATTCTTTCAAACGCAGGAGTTCCACCTCTTTCAACCACCGGTTTCGTTCTTCAAACCGGTGAATCAACCACCATAACCGCTCCAACCTCTTGGGGTGGCCGTTTCTGGGGCCGAACCCACTGTTCCCAAGACTCCACCACCGGAAAATTTTCATGTGTCACAGGTGATTGCGGCTCTGGAAAACTCGAATGCTCCGGCAACGGTGCAACACCTCCGGCAACGTTAGCTGAGTTCACCTTAGACGGTGCCGGTGGCCTAGACTTCTTCGACGTTAGTTTAGTCGACGGTTACAACGTTGCTATGTTGGTGGTCCCAGACGGTGGTTCTTCTGCTGGTAACTGTGGTAGTACCGGTTGTATTGGGGATTTGAACGGCGCGTGTCCTTCAGAGCTTAAGGTTATGAGCGTGGAGGGGGATGAGGGTGTTGTCGCGTGTAAGAGCGCGTGTGAGGCGTTTGGGTCGGAGGAGTATTGTTGTAGTGGCGCGTATGGTACACCCGATACTTGTAAGCCTTCATCTTACTCGCAGGTGTTCAAGACTGCTTGCCCACGCGCGTATAGCTATGCGTATGATGATAAAACGAGTACGTTTACGTGCGAAAGTGCGGATTATACTATTACCTTTTGCCCTGTTCCTAACACCAGTCAGAAAGAGTCACAGGGGCAAAACACAAACCATGAGAGTTCATCAAATTCAACAACCTCAACCCTAGTTGACAATGGCACAATGGAGTATGTAGGTGCTGCAGATCAAAGTGAAATATCATGGGCCACGTGTGTCCACGTGTTCCAATCTCAAGCCATCTCTGGCATTATCAGTATCACTACGCTTCTTTGGCACCTGTGCCTGCTTTTCTAA 969 0.484 MDHRTLLFSFLLTLHLSGVISTTFNIVNKCEYTVWPGILSNAGVPPLSTTGFVLQTGESTTITAPTSWGGRFWGRTHCSQDSTTGKFSCVTGDCGSGKLECSGNGATPPATLAEFTLDGAGGLDFFDVSLVDGYNVAMLVVPDGGSSAGNCGSTGCIGDLNGACPSELKVMSVEGDEGVVACKSACEAFGSEEYCCSGAYGTPDTCKPSSYSQVFKTACPRAYSYAYDDKTSTFTCESADYTITFCPVPNTSQKESQGQNTNHESSSNSTTSTLVDNGTMEYVGAADQSEISWATCVHVFQSQAISGIISITTLLWHLCLLF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0438 322 SMART tha2 24 247 IPR001938 -
Lan3g0438 322 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Lan3g0438 322 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Lan3g0438 322 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Lan3g0438 322 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Lan3g0438 322 ProSiteProfiles Thaumatin family profile. 21 247 IPR001938 -
Lan3g0438 322 PANTHER BNAA02G17480D PROTEIN 6 274 - -
Lan3g0438 322 PANTHER OS03G0233200 PROTEIN 6 274 IPR001938 -
Lan3g0438 322 Gene3D Thaumatin 22 247 IPR037176 -
Lan3g0438 322 MobiDBLite consensus disorder prediction 252 274 - -
Lan3g0438 322 PIRSF PR5 2 288 IPR001938 -
Lan3g0438 322 CDD TLP-PA 23 246 - -
Lan3g0438 322 SUPERFAMILY Osmotin, thaumatin-like protein 22 247 IPR037176 -
Lan3g0438 322 Pfam Thaumatin family 28 247 IPR001938 -
Lan3g0438 322 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0438 Lan-Chr3 3818641 3821109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0438 5 258 Receptor kinase-like Gene Family AT5G38280 53.257 1.33e-88 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0438 - - gmx:100785732 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0522 10 4185833 4188588 Lan3g0438 3 3818641 3821109 LSH
Lan3g0438 3 3818641 3821109 Lan13g0813 13 8814925 8819261 LSH