Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0405 ATGGATGGTGTAGTGTTGAGTGGTGAGAGGTTGAGATTAGTGGGAGTGGAGGAAGAGGTGGAGGAGGAAGAGAGGATAAAGGAATTGAAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCAAAAATGGTGTTAAGGGTTTTGGTGGTAGAAGCTGATGATTCTACTAGGCAGATTATAGCAGCACTTCTAAGAAAATGCAGCTATAAAGTGGCTGCTGTTCCAGATGGATTGAAAGCATGGGAAATACTCAAGGGAAGACCACACAATATTGATCTAATACTCACAGAAGTTGATCTGCCATCCATATCTGGCTATGCACTTCTAACACTAATTATGGAGCATGAGATTTGTAAAAACATACCAGTCATAATGATGTCATCACAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAACTGAGAAACTTGTGGCAGCATGTTTGGAGAAGACAATCGTCAGCCATTGGCGTAAATGGCCCCCGAGATGAGAGTACTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGCTACTAGTAATCACTCGAGTGGTGATGCTGCTTGCATCCAGAGAAATAAGGAACTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTGGCCTTGTTGAAACCGTGAGGGAATTTTCTCCGCGGACATGTGCTGAAGCATATCCAATTGGAACAAACACACAAGAGGCTGAAACATCCATTCGTTTAGGCCAGGCATTGATCAAGCATGATAGTCATGCTGGAGGATTAACTGTGGGTATCACCAAAAATGGTGAGGCCAGCATAACTAGTGGCAGAGACGGTGATCCAGATCATTTTAGGAGTGCTGAAATTAGTGGTGAGGCTCATGACAATGAGTATGTTCAAATTAGCTATTTTAAGGAGGCTATTGACTTGATTGGAGCATTTCAAACTCGTCCAAGCTGCAGTCTCAAAAATTCCACAGTTGATTGCACAGGCAAATTTGACTTTTCTCCACAATTGGATCTTTCCCTGAGAAGATCTCATCCCAGCAACTTTGAAAATGAACTCTCTGAAGAAAGGCACACCCTCATGCATTCTACTGCTTCAGCTTTCAAGCGGTATACTAACAGGCCATTGCAAGCTGCATCGGCAGTGTTGGTTAACTTCTCTGATAAACAAAGAGAACACAGAATAAATGGTGAGAAAAATATCCCTGTTGTTGCTAACGGCTGCAACTCAGATAGTTCAAAACCTAATATGCAGAGATGTATTATGCCTCCAGCTACAGCTCAATCGAAAGAATCTGAATTTGCAAATTCACATTCCCAGCAAGGCCATTTTTTCCCAATTCCAGTAAAAGGTGCAAGGTTCAATGACCTATGTGCAGACTATGGTTCTATACTTCCTCCAATATTTCGTACTCAGTCAGGTCCACCATCAATGCCAAGTCCTCAGTCAGTTGTTCTCCTTGAACCAACCTTTCAGCTAAATGCATTTTATCAGTCAAATATTAGAGAAAACGGTTCAGATCAGCTTTCTGAGTATTGTGGCCCAAACGGAAACAGCACCCCAAACCACATGGCGTACACACAGGGACATAGATCAGAACATGTAGAGGATCGAGGACAAATCTCTCCTGCAAATGATCGAAGTGTATCCAGTAGTTTCTGTAATGGAAATGCAAGCAATCTTAATAGCGTCGGTTATGGAAGCAATTGTGGAAATAGCAGTAATATTGATCAAGTTGCCATTGTCACGGCAGCTTCAGAAGAGGGTAAGAATGAAGACCTCACAAACAACGGGAGTGCTTATCGATCTACCCTGAGAGAAGCAGCTCTAAACAAGTTTCGCTTGAAACGGAAAGAGAGATGCTATGAGAAAAAGGTTAGATATGAGAGCAGAAAGAAACTAGCAGAGCAACGTCCCCGGGTGAAAGGACAATTTGTTCGTCAAGCACATCCTGATCAATAG 2019 0.4274 MDGVVLSGERLRLVGVEEEVEEEERIKELKGLMRWEKFLPKMVLRVLVVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPHNIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSAIGVNGPRDESTAQQKVEATAENNATSNHSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGLVETVREFSPRTCAEAYPIGTNTQEAETSIRLGQALIKHDSHAGGLTVGITKNGEASITSGRDGDPDHFRSAEISGEAHDNEYVQISYFKEAIDLIGAFQTRPSCSLKNSTVDCTGKFDFSPQLDLSLRRSHPSNFENELSEERHTLMHSTASAFKRYTNRPLQAASAVLVNFSDKQREHRINGEKNIPVVANGCNSDSSKPNMQRCIMPPATAQSKESEFANSHSQQGHFFPIPVKGARFNDLCADYGSILPPIFRTQSGPPSMPSPQSVVLLEPTFQLNAFYQSNIRENGSDQLSEYCGPNGNSTPNHMAYTQGHRSEHVEDRGQISPANDRSVSSSFCNGNASNLNSVGYGSNCGNSSNIDQVAIVTAASEEGKNEDLTNNGSAYRSTLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQAHPDQ* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0405 672 SMART REC_2 44 159 IPR001789 GO:0000160
Lan3g0405 672 MobiDBLite consensus disorder prediction 548 567 - -
Lan3g0405 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 654 IPR045279 GO:0009736
Lan3g0405 672 MobiDBLite consensus disorder prediction 651 672 - -
Lan3g0405 672 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 30 654 - -
Lan3g0405 672 ProSiteProfiles CCT domain profile. 625 667 IPR010402 GO:0005515
Lan3g0405 672 ProSiteProfiles Response regulatory domain profile. 45 163 IPR001789 GO:0000160
Lan3g0405 672 Pfam Response regulator receiver domain 46 157 IPR001789 GO:0000160
Lan3g0405 672 SUPERFAMILY CheY-like 44 167 IPR011006 -
Lan3g0405 672 Gene3D - 42 270 - -
Lan3g0405 672 CDD psREC_PRR 46 149 - -
Lan3g0405 672 Pfam CCT motif 625 667 IPR010402 GO:0005515
Lan3g0405 672 MobiDBLite consensus disorder prediction 170 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0405 Lan-Chr3 3268703 3273490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0405 323 672 Response Regulator Gene Family AT5G24470 33.428 1.36e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lan3g0405 Response_reg 2.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0405 K12130 - gmx:100777119 1002.28