Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0402 ATGGTTAACACACCAGAATCTTCCTCTAACCAACACTCTCCGAGCATTGCTCCTCCTTTGACGGCGGCGTCTGGGGACTCCATCAGCCCTAAGTTCCCCCCGCAAACCCTCCCTTCTCCCTGGGCTCAGGTCGACCGCGGCGGCGACGCGGAATCAACCATTCCCGCCCCACACTCGCCGTCTCTGCCGCCGCCGACTTCATCGTCGTCTTCCTCCTCCTCCTCTCTCCTTCCGGATCAGCCGGTTTCATCTGATTCCATTGAGAAGTCTAATTCTAACACTGTTGCTGCTGCTGATAGCTCTTCCTTTGATGCTAATGATGACAATGTGGGTCGTTCCCAGAAACCTGCTTGGAGAAAACTTCCGAACGGCTTCATTTTTGAGGCTGGTGCTGTAATGGGTGCTGATTCTTGGCCAGCTTTATCTGAATTCACCAAAGTTTCTGGTAAACTGCAACCCGAATGGTCTTCTTCCAAGGCTGCTGCTGAAGGATCATCACACTCCTCTTCTCAGGGCCCTCTAACTTCGCACTCTCCTCAGAAACAGGATAATAGTAATGCAAAACCTAATACTGCAGTGAACTATAATATGCCAAACGGACAAAGATTGATGAAACGGGGAGGTGGCAACAACATTGGGTCTGGTCCTACACAGAGCAGCTTCTCCAACCATCCTCCACCACCACCCTTTCCGGTATATCAGCTCCATCCAGGTAGCTATGGCATTTCAGATCATTCTCCAAGAGATCATTACTGGAACAATAGCTGGGATACAAGACCACCGGCTGGTGGCTTCGTGCCTGTGACATATGATCATTGGGGTTCTTCTCGAAGGGGTAACTTTGGGCCCCATCCATGCAGAGATGGTTCTTATCATAATAATTATGGCAGCCAGCGTGATCGGGATCATGGGAATTATGCTAATTCTAGAGATGCTCATGTACACCAACCAAGGATGCCTCCTCCAAGGGAATTATTGAGGCACCCACCACCTAATACTGCTGGATTTATTGGGCCCCAGCCCATCAGAGGACCCTTTCCCAACCATGGTGATTTCCCAAAGTTCTATTACTTTCCAACTCCATTATTCGATTACTTTAAGGGCATGCCGTTCATTACCCACGGTCCTCCTCCTGCATTATTCTTCCCTGCTGCTGAATCTCCTCTGACCAATATGATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAATGAAAGATGACTTTTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCAGTTGCTTTGATAGCAGACTTCCCTCGAGTCAGAAGTTTGACAAACAACATTCAGGTGATACTGGACTCAATGAGAACTTCTACTGTTGTAGAAGTACAGGGTGATAAGTTAAGGAGGCGTAACGAGTGGAAGACATGGGTGCCCTCTGCAAAGCTTCAGGCTGATTCTAGTTCAATATCTCCTGGTGGATCAAGACACAATAACCTAGCAGCAGATTTTCAAACTGAGGCCCTTGAAAATGCAACTAAGGAGGAAGGTCCAAGGGAGTCTTCAAATCATTCTCAACTCCCAAATGGTGATGCTGCAGGGAACAGCAATTATTAA 1593 0.4765 MVNTPESSSNQHSPSIAPPLTAASGDSISPKFPPQTLPSPWAQVDRGGDAESTIPAPHSPSLPPPTSSSSSSSSSLLPDQPVSSDSIEKSNSNTVAAADSSSFDANDDNVGRSQKPAWRKLPNGFIFEAGAVMGADSWPALSEFTKVSGKLQPEWSSSKAAAEGSSHSSSQGPLTSHSPQKQDNSNAKPNTAVNYNMPNGQRLMKRGGGNNIGSGPTQSSFSNHPPPPPFPVYQLHPGSYGISDHSPRDHYWNNSWDTRPPAGGFVPVTYDHWGSSRRGNFGPHPCRDGSYHNNYGSQRDRDHGNYANSRDAHVHQPRMPPPRELLRHPPPNTAGFIGPQPIRGPFPNHGDFPKFYYFPTPLFDYFKGMPFITHGPPPALFFPAAESPLTNMIVNQIDYYFSDANLMKDDFLRSNMDEQGWVPVALIADFPRVRSLTNNIQVILDSMRTSTVVEVQGDKLRRRNEWKTWVPSAKLQADSSSISPGGSRHNNLAADFQTEALENATKEEGPRESSNHSQLPNGDAAGNSNY* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0402 530 PANTHER LUPUS LA PROTEIN-RELATED 25 519 IPR045180 -
Lan3g0402 530 MobiDBLite consensus disorder prediction 1 121 - -
Lan3g0402 530 MobiDBLite consensus disorder prediction 147 241 - -
Lan3g0402 530 MobiDBLite consensus disorder prediction 514 530 - -
Lan3g0402 530 Pfam La domain 393 448 IPR006630 -
Lan3g0402 530 ProSiteProfiles La-type HTH domain profile. 383 472 IPR006630 -
Lan3g0402 530 MobiDBLite consensus disorder prediction 149 198 - -
Lan3g0402 530 SUPERFAMILY "Winged helix" DNA-binding domain 382 471 IPR036390 -
Lan3g0402 530 MobiDBLite consensus disorder prediction 65 109 - -
Lan3g0402 530 SMART la 387 465 IPR006630 -
Lan3g0402 530 MobiDBLite consensus disorder prediction 477 530 - -
Lan3g0402 530 MobiDBLite consensus disorder prediction 477 498 - -
Lan3g0402 530 CDD LAM 391 463 - -
Lan3g0402 530 Gene3D - 383 474 IPR036388 -
Lan3g0402 530 MobiDBLite consensus disorder prediction 1 32 - -
Lan3g0402 530 MobiDBLite consensus disorder prediction 284 322 - -
Lan3g0402 530 PANTHER LA-RELATED PROTEIN 1B 25 519 - -
Lan3g0402 530 MobiDBLite consensus disorder prediction 294 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0402 Lan-Chr3 3110802 3115229 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0402 K18757 - gmx:100785504 559.296