Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0391 ATGGAGTACGGTGTTGGAGGCGGTGGTGGGTTCCCCGGGGATCACCTCCACCATCACAATCATCACCATGATGGTGGTTCATCGGATTCTCAGAAGAGGAAGAAGCGTTACCACCGTCACACTGCTAACCAGATCCAAAGGCTGGAATCCATGTTCAAGGAGTGTCCACACCCTGATGAGAAACAAAGGATGCAGTTGAGCAGGGAGTTAGGTTTGGCCCCTAGACAGATCAAATTTTGGTTCCAGAACAGAAGGACTCAGATGAAAGCCCAGCATGAACGAGCTGATAACTGCACACTAAGGGCAGAGAATGATAGGATACGTTGTGAGAACATTGCATATAGAGAGGCCTTAAAAAACATTTTCTGCCCTTCTTGTGGTGGCCCTCCACTCCATGAAGATCCTTATGTTGATGAACAAAAGTTAAGATTGGAGAATGCACAACTCAAAGAGGAGGTTGATAGAGTATCTAGCATTGCAGCTAAATACATTGGGAGACCAATTTCTCAGCTTCCACAACTTCACCCTATTCACATATCCTCTTTGGACTTATCAATGGGGAGTTTTGGGACACAAGGTTTCGGCGGCGGTCCTTCCCTTGATCTTGATCTTCTACCTGGGAATGGTTCTTCATCATCCATGCAAAATGTGCCTTACCAACCTCCTTGTCTTTCAGACATGGATAAGTCCCTTATGTCGGATATTGCTTCAAATGCTATGGAAGAGTTAGTTAGGCTTTTGCAGACTAATGAACCCTTGTGGATGAAATCAAGCACTGATGGAAGAGATGTTCTTAATTTTGACACCTACGAAAGAATGTTCCCTAAGCCAAATAGTCACTTGAAGAACCCTAATGTTAGGATTGAAGCTTCAAGAGATTCAGGAGTTGTAATTATGAATGGCTTAACTATGGTTGACATGTTCATGGATCCAAACAAGTGGATGGAGCTATTTCCCACTATTGTCACAATGGCTAGAACTTTTGAAGTTGTATCTTCTGCCATAATGGGTGGTCATAGTGGTACTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTAGAGATTTCTACTTTCTGCGATACTGTCAGCAAATTGAGCAAGGGTTGTGGGCAATAGTTGATGTTTCTTATGATTTTCCCCAAGATAACAATCTTGCTCCTCAATTTCGATCTCATCGCCTTCCTTCCGGATGCTTTATACAGGACATGCCTAATGGTTATTCCCAGGTCACTTGGGTTGAGCATGTAGAGATTGAAGATAAAACTCCGGTTCATCGGCTTTATAGGAATCTTATCTTTAGTGGATTGGCATTTGGAGCACATAGATGGCTTAGTACTCTTCAGAGAATGTGTGAAAGAATTGCTTGTCTAATGGTATCAGGCAATTCTACCAGGGATCTTGGATCAGTGATTCCATCACCTGAGGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGATTACCAATTTCTGTGCAAGCATTAGCACTTCAGCTAGCCACAAATGGACCACTCTCTCAGGGTTGAATGAGATTGGAGTCAGAGTCACTGTCCATAATAGTTCAGACCCTGGCCAACCAAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCAATCCCTCCACAAACTGTATTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCCAATGGTAATGCTGTGCAAGAAGTTGCTCATATAGCAAATGGTTCGCATCCTGGTAACTGTGTATCTGTGCTTAGAGCTTTCAACACTAGTCAAAACAGCATGTTGATACTCCAAGAGAGCTGCATAGACTCTTCAGGCTCAATTGTAGTTTATTGTCCAGTTGAATTGCCAGCCATAAACATCGCGATGAGCGGCGAAGACCCTTCATACATTCCCTTACTACCATCAGGATTCACCATTTCACCTGATGGCCAAAGTGATGAAGGAGGAGGAGATGGAGCATCAACAAGCTCAAACACAAACAGAAACACTTCAAGTGGGTCACTTGTAACAGTTGCATTTCAGATTTTAGTGAGTAGTTTGCCATCTGCAAAGCTGAATAAGGAGTCAGTGAATACTGTTAATAGCCTCATTGGAACCACTGTCCAACAAATAAAGGCTGCTTTGAATTGCCCTAGTTCCTAA 2175 0.4313 MEYGVGGGGGFPGDHLHHHNHHHDGGSSDSQKRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRAENDRIRCENIAYREALKNIFCPSCGGPPLHEDPYVDEQKLRLENAQLKEEVDRVSSIAAKYIGRPISQLPQLHPIHISSLDLSMGSFGTQGFGGGPSLDLDLLPGNGSSSSMQNVPYQPPCLSDMDKSLMSDIASNAMEELVRLLQTNEPLWMKSSTDGRDVLNFDTYERMFPKPNSHLKNPNVRIEASRDSGVVIMNGLTMVDMFMDPNKWMELFPTIVTMARTFEVVSSAIMGGHSGTLQLMYEELQVLSPLVSTRDFYFLRYCQQIEQGLWAIVDVSYDFPQDNNLAPQFRSHRLPSGCFIQDMPNGYSQVTWVEHVEIEDKTPVHRLYRNLIFSGLAFGAHRWLSTLQRMCERIACLMVSGNSTRDLGSVIPSPEGKRSMMKLAQRMITNFCASISTSASHKWTTLSGLNEIGVRVTVHNSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNCVSVLRAFNTSQNSMLILQESCIDSSGSIVVYCPVELPAINIAMSGEDPSYIPLLPSGFTISPDGQSDEGGGDGASTSSNTNRNTSSGSLVTVAFQILVSSLPSAKLNKESVNTVNSLIGTTVQQIKAALNCPSS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0391 724 Gene3D - 18 105 - -
Lan3g0391 724 SMART START_1 234 459 IPR002913 GO:0008289
Lan3g0391 724 MobiDBLite consensus disorder prediction 14 31 - -
Lan3g0391 724 Pfam Homeodomain 34 89 IPR001356 GO:0003677
Lan3g0391 724 Pfam START domain 235 459 IPR002913 GO:0008289
Lan3g0391 724 SUPERFAMILY Homeodomain-like 17 91 IPR009057 -
Lan3g0391 724 ProSiteProfiles START domain profile. 225 462 IPR002913 GO:0008289
Lan3g0391 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 722 IPR042160 -
Lan3g0391 724 CDD homeodomain 33 92 IPR001356 GO:0003677
Lan3g0391 724 Gene3D - 232 459 IPR023393 -
Lan3g0391 724 Coils Coil 139 159 - -
Lan3g0391 724 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Lan3g0391 724 MobiDBLite consensus disorder prediction 651 673 - -
Lan3g0391 724 CDD START_ArGLABRA2_like 229 458 - -
Lan3g0391 724 MobiDBLite consensus disorder prediction 1 41 - -
Lan3g0391 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 21 722 - -
Lan3g0391 724 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Lan3g0391 724 SMART HOX_1 32 95 IPR001356 GO:0003677
Lan3g0391 724 SUPERFAMILY Bet v1-like 226 460 - -
Lan3g0391 724 SUPERFAMILY Bet v1-like 480 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0391 Lan-Chr3 2950617 2954719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0391 29 724 Homeobox Transcription Factor Family AT1G73360 66.003 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan3g0391 START 3.7e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0391 K09338 - gmx:100809075 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0661 10 6314296 6318208 Lan3g0391 3 2950617 2954719 LSH
Lan17g0842 17 10446477 10451956 Lan3g0391 3 2950617 2954719 PCT
Lan3g0391 3 2950617 2954719 Lan17g0842 17 10446477 10451956 PCT