Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0384 ATGTTTGCCAATAACTTATCTACCTTATCACTTCCCATTTCTGATCCTTCTTTCTCATGCCTTGAGAATGGCACCTCCATCAATAAAAGGAAGAGAAGACCAACAGGAACACCAGATCCAGATGCAGAAGTGGTGTCACTTTCACCAAAATCCTTATTAGAATCAGATAGTTATGTGTGTGAGATCTGCAACAAAGGATTCCAAAGGGACCAAAACCTTCAGATGCATAGGAGGAGACACAAGGTGCCATGGAAGCTATTGAAGAGAGAGACATCAATGGTGAAAAAGAGAGTGTTTGTGTGTCCTGAATCTAGTTGCTTGCACCATGATCCATGTCATGCACTTGGAGATCTTGTTGGGATAAAGAAACATTTTAGAAGGAAACATAGTAATCATAAGCAATGGGTTTGTGAGAGATGCACTAAAGGCTATGCAGTGCAATCTGATTACAAAGCTCATCTTAAAACTTGTGGCACTAGAGGACATTCTTGTGACTGTGGTCGTGTCTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGAAGCTTGTAACATGGGTATGCTAAGGACAGAACCTCATCATCAACAATTACAACTACACCAACAACAACCTATGTGTTTGTCTAGAACAGCTTCAAGCCCTAGCCCATCAAATGAAACCAATTTCAGAACATGCCCTAATTTGCCAAAACCAACAACAGATCCCTCATTCTTCAATATGAACCCTACTTCTTCCACTATTGCCACCAATACTGAAACATCATTATCCAGGAAAAACAATAAACTCTACCCCAACTTGGATCTTCAACTCTCCACCAACACAAACACAAACACATCAAACACTTATACCATTGTTGTTGTGGCTGCATCACTAACACCTAATAAGAAAGAAGATCATCATCAAAAGCAGTCTACACGGTTGCAGCTATCAATTGGTTCATCTCATAACAATGAGAAAAATGACCAACCAAATAGGAACAACAACATTATTAATGAGAAAGAAGGCATGGCTTTGTTGAGGGTAGCAATGGCTGAGAAAGTTTATGCTGAGGAAGCAAGGAAGCAAGCAAAGAAGCAGATAGAAGTTGCAGAACAAGAGTTCACAAGTGCTAAGAGGATTAGACAACAAGCAGAAGTGGAAGTTGAGAAAGCCTATGCTTTGAAAGAACATTCAATGAAGCAGATAAACTCCACCATGCTTCAAATCACTTGCCATGCTTGCAAGCAAAGTTTCAAGGTGCTGGGCACAGCCATATAG 1257 0.4041 MFANNLSTLSLPISDPSFSCLENGTSINKRKRRPTGTPDPDAEVVSLSPKSLLESDSYVCEICNKGFQRDQNLQMHRRRHKVPWKLLKRETSMVKKRVFVCPESSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCTKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQEACNMGMLRTEPHHQQLQLHQQQPMCLSRTASSPSPSNETNFRTCPNLPKPTTDPSFFNMNPTSSTIATNTETSLSRKNNKLYPNLDLQLSTNTNTNTSNTYTIVVVAASLTPNKKEDHHQKQSTRLQLSIGSSHNNEKNDQPNRNNNIINEKEGMALLRVAMAEKVYAEEARKQAKKQIEVAEQEFTSAKRIRQQAEVEVEKAYALKEHSMKQINSTMLQITCHACKQSFKVLGTAI* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0384 418 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lan3g0384 418 MobiDBLite consensus disorder prediction 24 45 - -
Lan3g0384 418 MobiDBLite consensus disorder prediction 294 328 - -
Lan3g0384 418 SMART c2h2final6 58 80 IPR013087 -
Lan3g0384 418 SMART c2h2final6 135 162 IPR013087 -
Lan3g0384 418 SMART c2h2final6 99 129 IPR013087 -
Lan3g0384 418 MobiDBLite consensus disorder prediction 208 228 - -
Lan3g0384 418 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lan3g0384 418 MobiDBLite consensus disorder prediction 305 328 - -
Lan3g0384 418 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Lan3g0384 418 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 412 - -
Lan3g0384 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lan3g0384 418 Gene3D Classic Zinc Finger 57 81 - -
Lan3g0384 418 PANTHER OS03G0310200 PROTEIN 1 412 IPR039288 GO:0009630
Lan3g0384 418 Coils Coil 346 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0384 Lan-Chr3 2859864 2862729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0384 22 415 C2H2 Transcription Factor Family AT2G01940 54.229 7.69e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0384 zf-C2H2 0.00087 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0384 K25871 - gmx:100800187 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0655 10 6221028 6224456 Lan3g0384 3 2859864 2862729 LSH