Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0377 ATGGTGTTAGGCTGGAGAAGAAGGAAGAACAATAACAACAACCATAAGGGTGTTAAGCCAAATGTTGAAGTGGTGATTCCCAACCACTTTATGTGTCCAATTTCTTTGGATTTGATGAAAGATCCTGTGACATTGTCCACTGGGATAACATATGATAGAGAAAACATGGAAAAATGGTTTGATAATGGGAATTGCACATGTCCTGTTACAAACCAGATTGTTAGGAACTTTGATATGATACCAAACCATACTCTTCGGATAATGATCCAAAATTGGTGTGTGGAGAATAAGCAACGTGGGGTAGAGAGGATTCCAACACCAAGAATACCGATTAGTCCTTTCGATGTTTTCGAGCTTCTTCGCCAAGTGAAGGCCACAGCTAGAGGTTTAGACCAATATGGTTGCATTGAATTGTTGATGAAAATGAAGAGGTTGGGTAATGAGATGGATAGGAACAAAAGATGCATAGTGGAGAATGGAGTGCAGGGTGCATTGGCTTCAGCATTTGATGCATTTGCAAATGATTCTATTGAGAGGAATGTGAGTGTTCTTGAAGAGATTTTATCAGCATTGAATTGGACATTTCCACTTCAATTTGAGGCACACAAAATTTTGGGGTCCAAGGCTTCATTAACTTGCATGGTTTGGTTCTTGAAGCATCAAGATCTCTCAGGGAAAGAGAAATCTATTGTTGCATTGGAAGAGCTTCTTTCATTTGGTGATGAAAACCATGTAGAAGCTTTGTCAGAAATTGAAGGAGTTATTGAGTTATTGGTAGAGTTCATAAACAAGAGAATTAGTCCAACTATTACAAAGGCTTCAATGAAGGTTGTTTGGTACATGATTTCATCCTCTTATCCTTGTAGTGAAAAAATGAAGCTATCATTTGTTGATTTGGGTTTGGTTTATTATCTTTTGGACATTCTCATTGACTCAGAAAAGAGCCTTTGTGAAAAATCTTTAGCCATTTTTGACTCCCTATGTAGCTGTGAACAAGGGAGAGAAAAAGCTTATGGTAATGATCTAACAGTTCCTTTGTTGGTTAAGAAAATATTGAGAGTTTCAGCATTGGCCACAGAACATTCTGTCTCTTCAATATGGAAGATGTGCAAGTTTGGAGAAAAAGATGATGAAAGAAGAGTTCTTGTTGAAGCACTTCAAGTTGGTGCATTTCAGAAACTATTGTTGGTATTGCAGGTTGGATGTGATGATAAGATCAAGGATAAAGCCACTGAGCTTCTCAAAATGATGAATCCTTATAGGTCTGATTTGGAATGCATAGACTCAGATTACATGAATCTCTTGAGATCGTTTTAA 1317 0.3751 MVLGWRRRKNNNNNHKGVKPNVEVVIPNHFMCPISLDLMKDPVTLSTGITYDRENMEKWFDNGNCTCPVTNQIVRNFDMIPNHTLRIMIQNWCVENKQRGVERIPTPRIPISPFDVFELLRQVKATARGLDQYGCIELLMKMKRLGNEMDRNKRCIVENGVQGALASAFDAFANDSIERNVSVLEEILSALNWTFPLQFEAHKILGSKASLTCMVWFLKHQDLSGKEKSIVALEELLSFGDENHVEALSEIEGVIELLVEFINKRISPTITKASMKVVWYMISSSYPCSEKMKLSFVDLGLVYYLLDILIDSEKSLCEKSLAIFDSLCSCEQGREKAYGNDLTVPLLVKKILRVSALATEHSVSSIWKMCKFGEKDDERRVLVEALQVGAFQKLLLVLQVGCDDKIKDKATELLKMMNPYRSDLECIDSDYMNLLRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0377 438 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Lan3g0377 438 PANTHER WDSAM1 PROTEIN 13 438 IPR045185 GO:0061630
Lan3g0377 438 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Lan3g0377 438 SUPERFAMILY RING/U-box 24 102 - -
Lan3g0377 438 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Lan3g0377 438 CDD RING-Ubox_PUB 30 72 IPR045210 -
Lan3g0377 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 438 - -
Lan3g0377 438 Gene3D - 118 416 IPR011989 -
Lan3g0377 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Lan3g0377 438 SUPERFAMILY ARM repeat 135 417 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0377 Lan-Chr3 2811818 2813170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0377 5 429 U-box Gene Family AT5G37490 43.056 8.27e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0377 - - lang:109340061 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0849 17 10612972 10614517 Lan3g0377 3 2811818 2813170 PCT
Lan3g0377 3 2811818 2813170 Lan17g0849 17 10612972 10614517 PCT