Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0374 ATGGAACAATATTCATCAAAATCAGAATCACCACCAAAGTCTCTTATGGAGAATCTTCTTGGCCTTCTAAGGGTTCGTGTTAAGCGTGGTGTTAATCTTGCTGTTCGTGATGCTCGTAGCAGTGATCCTTATGTTATTCTTAAGATGGGTAAACAGAAATTTAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACATTACCTTCTCTGTTTTGGATCCAAATCTTCCAATTTTACTGACTGTGTATGACCATGACACATTTAGCAAAGATGACAAAATGGGTGATGCCGAATTCGAAATATTACCATTTATAGAAGCCTTGAGGATGAATGTAAATGGCCTCCCAAATGGTACTATAATATCAAGAATACAACCAAGCAAGCAAAATTGCCTAGTGGATGAAAGTTGCATAACTTACACTAGTGGCAAGGTTATCCAAGATATGATCCTTAGATTGCAAAATGTTGAATGTGGTGAAGTGGAAATTCAATTGCATTGGATTCATCTTCCTGGTTGTAAAGGTTTATGA 543 0.3702 MEQYSSKSESPPKSLMENLLGLLRVRVKRGVNLAVRDARSSDPYVILKMGKQKFKTRVIKKDVNPEWNEDITFSVLDPNLPILLTVYDHDTFSKDDKMGDAEFEILPFIEALRMNVNGLPNGTIISRIQPSKQNCLVDESCITYTSGKVIQDMILRLQNVECGEVEIQLHWIHLPGCKGL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0374 180 Gene3D C2 domain 17 176 IPR035892 -
Lan3g0374 180 Pfam C2 domain 21 105 IPR000008 -
Lan3g0374 180 SMART C2_3c 22 117 IPR000008 -
Lan3g0374 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 179 IPR044562 -
Lan3g0374 180 PRINTS C2 domain signature 37 49 IPR000008 -
Lan3g0374 180 PRINTS C2 domain signature 61 74 IPR000008 -
Lan3g0374 180 PRINTS C2 domain signature 82 90 IPR000008 -
Lan3g0374 180 CDD C2_ArfGAP 20 163 - -
Lan3g0374 180 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 11 179 - -
Lan3g0374 180 ProSiteProfiles C2 domain profile. 7 121 IPR000008 -
Lan3g0374 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 17 115 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0374 Lan-Chr3 2793601 2796070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0374 53 180 C2H2 Transcription Factor Family AT1G70790 58.462 1.15e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0374 - - lang:109340065 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0867 17 10945311 10947003 Lan3g0374 3 2793601 2796070 PCT
Lan6g1000 6 9542069 9543492 Lan3g0374 3 2793601 2796070 PCT
Lan3g0374 3 2793601 2796070 Lan17g0867 17 10945311 10947003 PCT
Lan3g0374 3 2793601 2796070 Lan6g1000 6 9542069 9543492 PCT