Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0347 ATGGATCCACCTCCTCCACTACCACTAGCATCTGACTCGACCGCGGAACCTTCAGCATGGAATGATGAGGTTCTTCCACCTGTTCCCGGTGGCAAGATCCGCCTCATGTGCAGTTACGGAGGCCACATAATGCCACGCCCTCACGACAAGTCCCTCTGCTACATTGGAGGCGACACAAGAATCGTTGTCGTGGATCGAATTTCCTCATTGAAAGACCTCACCACACGCCTCTCTCACACAATCCTTAATGGAAGACCCTTTATCCTCAAGTACCAGATACCCAATGAGGATCTTGATAACCTCATCACTGTGACAAATGATGAAGACCTTGACAACATGATTGAAGAGTTTGATAGAATAGCAGAATCCTCTGCCTCTCCCCTGAAACCTTCATCTTCAAGACTAAGGGTGTTTCTGTTCTTCAATAAAAATGAAGCCACAGTTTCAATGGGTTCACTCATTGATGATGCAAAGTCTGAAACATGGTTTGTTGATGCGTTGAACAACTCAGGTATTCTTCCAAGGGTAGTGTCAGAATCTGCTGCAGTTGATAGCTTTGTGAACCTTGATGGTCTTAGTCCTAGTGCTTCAAGCAATAACTTGGAGCCTAAGTTTCATGCTCAGGGTGATAGAGACAATAAGGTTAAGGTTTTGGTTGATGTGGAGAATAGTTCATCAAATTGTTCTTCTCCATCAATGACAAATCTGCCTCCAAACCCTGCACCTGTGACTATGGCATCATTGGCTATGGTTACTACAAGTGATAACATGAATAGGGTTGTGTATGATGATGAAAGATCAGATGAAGGTGCATCTTTTGGGTTTCAGAAACTTCCTTTACCATTGCAGCTTGTGCAACCAAGGAGTGGTGGTTTGTGTTTTCCTTCTCCTGATTCAGTTACAAGTGATAATAGTGTTCCATCTACAAATTCTTTCTCCAAAGCTGTTTACTATCAAGAACAAGTCCAAGTTGCACAAATAGACAACAAAGCTAATAGTGAAATATCTGATCACATCCCTGTACTACAAAGGGAACAAAATCAGGATCCTGGTTTCACACTACCCCCACAAATGGATCCAAATCAGCAACATCATCAACAACAACAACAACAACAATTTGTCCATGCTAGGACTCAATATATTCACCACCCTACAAGTCAAATTCCAATGTCATCCTACTACCAAGTTTATGCTCAACCATCACAGCAACAATACCCACTTTATGTAATGCCTGTTGGACCAACACAACCATATAACATGGCATTGCAATCAAATATAGCTGACCCTAATGTGGTACCCTTAGGTAGAACACTAATACCCCACCAAAGTGTTGCAGCCACAACACCATACAAGGATAACACTCCACCTATTTACCCTACTAAATCAGTTATTCCAACAACATACAAGGATGCTTCAAACCCTGCATTTGTTCAAATGTCATCAAATCAATTTCAGCAACAATATGTTGGTGTGCCTCAACTCCACCATCATTCACCACAACACATTGCTGTAGTTTCTTCAGTTAATACTAGTTATGGTTATGAATATGGTGGCACTGTGCAAGATCAAGTATACTACACACAACAGCAATGTACTGATCCATTGCAATCTCAGTATCAATCTATGATGCCAGTAGTGGCTGCTACTACTGCATTATCTGATGCTTCACAACAATTTTCTTCTGATAATATTCAGCAGCAGACAAATAGAACTTCACAGATGGTATAA 1728 0.4144 MDPPPPLPLASDSTAEPSAWNDEVLPPVPGGKIRLMCSYGGHIMPRPHDKSLCYIGGDTRIVVVDRISSLKDLTTRLSHTILNGRPFILKYQIPNEDLDNLITVTNDEDLDNMIEEFDRIAESSASPLKPSSSRLRVFLFFNKNEATVSMGSLIDDAKSETWFVDALNNSGILPRVVSESAAVDSFVNLDGLSPSASSNNLEPKFHAQGDRDNKVKVLVDVENSSSNCSSPSMTNLPPNPAPVTMASLAMVTTSDNMNRVVYDDERSDEGASFGFQKLPLPLQLVQPRSGGLCFPSPDSVTSDNSVPSTNSFSKAVYYQEQVQVAQIDNKANSEISDHIPVLQREQNQDPGFTLPPQMDPNQQHHQQQQQQQFVHARTQYIHHPTSQIPMSSYYQVYAQPSQQQYPLYVMPVGPTQPYNMALQSNIADPNVVPLGRTLIPHQSVAATTPYKDNTPPIYPTKSVIPTTYKDASNPAFVQMSSNQFQQQYVGVPQLHHHSPQHIAVVSSVNTSYGYEYGGTVQDQVYYTQQQCTDPLQSQYQSMMPVVAATTALSDASQQFSSDNIQQQTNRTSQMV* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0347 575 SMART PB1_new 47 140 IPR000270 GO:0005515
Lan3g0347 575 Pfam PB1 domain 48 140 IPR000270 GO:0005515
Lan3g0347 575 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 16 238 - -
Lan3g0347 575 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 256 567 - -
Lan3g0347 575 CDD PB1_UP2 36 140 - -
Lan3g0347 575 MobiDBLite consensus disorder prediction 1 23 - -
Lan3g0347 575 PANTHER OS05G0427100 PROTEIN-RELATED 16 238 - -
Lan3g0347 575 PANTHER OS05G0427100 PROTEIN-RELATED 256 567 - -
Lan3g0347 575 MobiDBLite consensus disorder prediction 347 370 - -
Lan3g0347 575 Gene3D - 52 141 - -
Lan3g0347 575 SUPERFAMILY CAD & PB1 domains 48 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0347 Lan-Chr3 2488262 2490603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0347 32 140 MAP Kinase Kinase Kinase AT3G46920 44.037 1.15e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0347 - - lang:109357922 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0445 10 3195235 3197458 Lan3g0347 3 2488262 2490603 LSH