Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0340 ATGGCAACACCGTTAACTGCAGTGCTCTCAAATCCCGTTAACAAAGTCGATTCTTCTTCTTCTTCTTCATCAAATGGATTCGGTTTCAATCGTTCCCAATTGGAATCGCCAATTTTGATTTTTTGCTTTTTCCATAAAGCGATTCGGAATGAGCTCGATGCATTGAATCGATTAGCTATGGCATTCGCTAATGGTAACCGTTCTGATATTGACCCTCTTTCAGAGCGATATCATTTTATCAGATCCATGTACACGCATCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAAAATGAAAGCAATCTTTTTAATCATCTATTTGAGCTATTAAATAGCTCAAATACTTCCATCCATAATGATGAAAATTTCCCAAGAGAGTTAGCATCCTGCACAGGAGCTCTGCAAACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAACAGGTTTTTCCACTGCTTATTGAGAAATTCTCTCTCGAGGAACAGGCATCCTTAGTTTGGCAATTTCTTTGCAGTATTCCTGTGAATATGATGGTAGAATTTCTTCCATGGCTTTCAAAGTCTATATCACCTGACGAATCTCATGACTTGCGTAAGTGCTTAAGCAAGGTAGTGCCGGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGATGGGAGTAGTGCTAAAACAGTTGATAATTGTATAGATCACTCTCAGGTTCTAAGTAGTCCTAGTCCATTAACCCATCAAATTGGAAAAGTAAAATGTGCATGCGAGTCAACTGCAACTGGTAAAAGGAAATGTTCTGGATCTATCCTGGATGTTTCTGATACCATGGGAACACATCCTATAGATGAAATATTGATTTGGCATAATGCAATTAAAAAGGAGTTGAATGAAATAGCAGCGGAGACCAGAAAGATACAACTCTCTGGAGATTTGACTAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATCGCCGAAGTTTGCATGTTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCAGTAGATGAAGAAGTTTCTTTCTTTGAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCACTATTTGATTGAAAGTATACAAAATGAAGGAGCCACATCTAATTCGGAAGCGGAATTTTATTCCAAATTGTGCTCACACGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATGATGAGGAAGTTCAGGTTCTTTCACTTGCACGGAAGCATTTTAGCTTCAAAAGGCAACGAGAACTTCTGTACCAAAGCTTGTGTGTGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGGCCATTATCTGAATATGAAGCAAAGCTGTTTCTGAAGAACATGCAATTAGCAGCTCCTGCCATAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGGACGTAATGATGGTCTGTGTTTGTCTTTAAGAGCATCAGCTTGCTGTCGATTCTCTGATATCGAAGATAATATTGTCCGGTCTTCCTGTACTTGTGAGTCTGCATTATCTGGTAGAGGTTACTCAGTATTAGCTGAATCAGATGGGACCCAAAGACCAGCCAAGCGAAACAAATTGGAGTTGCACAGGAATGTAGATGTACCTGAAACTTCAGAAAATGGAAGTACCCAGAAACAATGTTGTGGTGCTCGGTCTTGTTGTGTGCCGGGTTTAGGAGTAAGCACTAACAATTTGGGGCTGAGTTCTCTTTCGACAGCCAAGTCCCTACGCTCCTTGTCTTTCACTTCTTCTGCCCCATCTATTAATTCCAGTCTTTTCATATGGGAAAGTGACAGCAGCCCCTGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACAAAAGGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTAAGTGATGGTGATGAAACAGTTATTCGACAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATCGTATTTCCAGCATTGGAATCCAAAGAGTCGCTTCATAATGTCAGCCATTCATATACACTGGACCACAAGCAAGAAGAAAAGTTATTTGAAGATATTTCACGTGCTCTTTCTGAGCTCTCTGTTCTTCATGAAGCCTTGCAGATTACTCATATGTCACAGGATTTAAGTGAAGGAAATTTTGGAACTTCCAATGCTGATGATAACGATATTATCAGAAAGTACAATGAGCTTTCAACTAAGCTTCAAGGGATGTGCAAGTCCATAAGAGTGTCACTGGATCAGCATATTTTCAGGGAAGAGCTGGAGCTCTGGCCATTGTTTGGTAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACTTCTGCGCTTACTCAGGATGAACAGAACAAAATGATGGATACGTGGAAACAGGCAACGAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCGGTATCCATATCACAAGCAGAAACATCAGAGTGTAGCACCTCTCTAAGAGGCTCTGACTATCAAGAAAGCTTGGACCTGAATGATCAGATGTTCAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGGTCCGGAAAGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTACCTTGTGCAGAATTTAATGACAAGTCGATGGATAGCTTCCCAGCAGAACTTACCTAAAGCTTTATCTGGGGAACCATCTAATAAAGAAATAGGACTTGTACCATCATTTTGGGACCCACAGAAACAAGTACTTGGATGTGAGCATTATAAGCGAAATTGCAAGCTTCGGGCTGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGATAATATTAGCGATCACTCGATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGTCTAACTATACAGCCAGTCGGGCCTATATGCATCTCATCTTCATGTAATGGACTTTCCATGGCAAAATACTACTGCAACATATGCAAATTTTTCGATGATGAAAGGAATGTATATCATTGCCCATTCTGCAATATATGCCGTGTTGGCCAAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGTAACTGTTGCCTGGGGATTAAATCAGCATCTCACAAGTGTCTGGAGAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGATGATTTGTTCACATCAAGTGCAACAGTCAGAGCTCTACCTTGTGGACATTATATGCATTCATCTTGTTTTCAGGCATACACTTCTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGTATGCTTGACGCTTTATTAGCTGCTGAGGAGCTTCCTGATGAGTACAAGGACCGCTCTCAGGACATACTCTGCCATGATTGTGATAGAAAGGGCATGTCACGCTTCCACTGGTTATATCACAAATGTGGATTTTGTGGCTCCTACAATACCAGGGTGATCAAGACAGAGGCCTCAAACTCCAGCTGCTGA 3696 0.4077 MATPLTAVLSNPVNKVDSSSSSSSNGFGFNRSQLESPILIFCFFHKAIRNELDALNRLAMAFANGNRSDIDPLSERYHFIRSMYTHHSNAEDEVIFPALDIRVKNVAQTYSLEHKNESNLFNHLFELLNSSNTSIHNDENFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVEFLPWLSKSISPDESHDLRKCLSKVVPEEKLLQKVIFTWMDGSSAKTVDNCIDHSQVLSSPSPLTHQIGKVKCACESTATGKRKCSGSILDVSDTMGTHPIDEILIWHNAIKKELNEIAAETRKIQLSGDLTNLSAFNERLQFIAEVCMFHSIAEDKVIFPAVDEEVSFFEEHAEEESQFNDFHYLIESIQNEGATSNSEAEFYSKLCSHADHIMETIQRHFHDEEVQVLSLARKHFSFKRQRELLYQSLCVMPLKLIERVLPWLVGPLSEYEAKLFLKNMQLAAPAIDSALVTLFCGWACKGRNDGLCLSLRASACCRFSDIEDNIVRSSCTCESALSGRGYSVLAESDGTQRPAKRNKLELHRNVDVPETSENGSTQKQCCGARSCCVPGLGVSTNNLGLSSLSTAKSLRSLSFTSSAPSINSSLFIWESDSSPCDVGSAERPIDTIFKFHKAIQKDLEYLDVESGKLSDGDETVIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYTLDHKQEEKLFEDISRALSELSVLHEALQITHMSQDLSEGNFGTSNADDNDIIRKYNELSTKLQGMCKSIRVSLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPVSISQAETSECSTSLRGSDYQESLDLNDQMFKPGWKDIFRMNQNELESEVRKVYRDSTLDPRRKAYLVQNLMTSRWIASQQNLPKALSGEPSNKEIGLVPSFWDPQKQVLGCEHYKRNCKLRAACCGKLFTCRFCHDNISDHSMDRKATLEMMCMRCLTIQPVGPICISSSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTSSHYTCPICSKSLGDMAVYFGMLDALLAAEELPDEYKDRSQDILCHDCDRKGMSRFHWLYHKCGFCGSYNTRVIKTEASNSSC* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0340 1231 Pfam Zinc-ribbon 1163 1220 IPR039512 -
Lan3g0340 1231 SUPERFAMILY CHY zinc finger-like 980 1044 IPR037274 GO:0008270
Lan3g0340 1231 Gene3D - 1187 1228 - -
Lan3g0340 1231 SUPERFAMILY RING/U-box 1113 1168 - -
Lan3g0340 1231 CDD Hr-like 299 427 - -
Lan3g0340 1231 PANTHER CHY ZINC FINGER PROTEIN 20 1231 - -
Lan3g0340 1231 CDD Hr-like 44 169 - -
Lan3g0340 1231 SMART ring_2 1116 1157 IPR001841 -
Lan3g0340 1231 Gene3D nmb1532 protein domain like 299 446 - -
Lan3g0340 1231 Gene3D nmb1532 protein domain like 35 189 - -
Lan3g0340 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1160 IPR013083 -
Lan3g0340 1231 Pfam CHY zinc finger 987 1062 IPR008913 GO:0008270
Lan3g0340 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 1231 - -
Lan3g0340 1231 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Lan3g0340 1231 Pfam Hemerythrin HHE cation binding domain 296 429 IPR012312 -
Lan3g0340 1231 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Lan3g0340 1231 Pfam Hemerythrin HHE cation binding domain 642 805 IPR012312 -
Lan3g0340 1231 SUPERFAMILY Zinc hairpin stack 1053 1109 IPR037275 -
Lan3g0340 1231 Pfam Ring finger domain 1115 1157 IPR001841 -
Lan3g0340 1231 CDD Hr-like 644 804 - -
Lan3g0340 1231 ProSiteProfiles Zinc finger CHY-type profile. 980 1049 IPR008913 GO:0008270
Lan3g0340 1231 CDD RING-H2_Pirh2 1115 1158 - -
Lan3g0340 1231 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Lan3g0340 1231 Gene3D nmb1532 protein domain like 638 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0340 Lan-Chr3 2423693 2434102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0340 24 1231 C2H2 Transcription Factor Family AT3G18290 66.338 0.0 1632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0340 K16276 - gmx:100791354 2125.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1064 6 10284969 10296479 Lan3g0340 3 2423693 2434102 PCT
Lan3g0340 3 2423693 2434102 Lan6g1064 6 10284969 10296479 PCT