Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0333 ATGGTGGAAAATCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTTATCACATATTATCTTATAAGGAAAGTTTCTGATACTAGCTTCACATCCAAAGTTATAACAACTGTTGATCTCAACAAGTCTGAACCTTGGGATCTCCCAGGTAAGGCTTCAATGGGGGAGAATATATGGTATTTTTTCAGTATGAGAGACAAAAAGTATCCAACTGGACTTAGAACCAATCGAGCCACTGAATCAGGTTACTGGAAAACTACAGGGAAAGATAAGGACATTTTTTGTGCTAGGGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTTTATAAGGGTAGAGCACCAAGAGGTGAAAAAAGCAATTGGGTTATGCATGAATATAGACTAGAAAACAAACATGGTTTTCTACATTCACAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAAACCGCAGCAGCCAAAAAATCACAGCAGATATCATCATCCCAACCAGAATCTCCATGTGACACAACCTCAATGGTCAATGAACTTGGTGATGTTGAACTGCCTAATAATCTAAACAATGTTACAAATTCATCAACTGCATTCATCAACATTAATTCATCAGGGCAAACTTACAACAATGATCTTAGCAATGTCAACACAAATATGAACTTCACCATGAATTTGCCAAGTGATGTTCCTTCTATTCCATCATGGTCTTCAGGGTTGCTGAATCCAAATAATATTTCTGTAAATTCCTTGCTTCTCAAGGCATTGCAGCTTAGAAACTATCAACAACAAAGAGAAGTTGCAGCAGCCAGTGATCATTTTGCATCATATAATAATATGCCTCAACAAGGAATTTCCCAAGTTGGAACTCATCATGACCTAAGTTCATCAAATCTCAGTGCTTCTTCTTCTTCAAAAGTTTTAGAATGTATGCTACAGCAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 972 0.3786 MVENLPPGFRFHPTDEELITYYLIRKVSDTSFTSKVITTVDLNKSEPWDLPGKASMGENIWYFFSMRDKKYPTGLRTNRATESGYWKTTGKDKDIFCARVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHGFLHSQDEWVVCRVFQKTAAAKKSQQISSSQPESPCDTTSMVNELGDVELPNNLNNVTNSSTAFININSSGQTYNNDLSNVNTNMNFTMNLPSDVPSIPSWSSGLLNPNNISVNSLLLKALQLRNYQQQREVAAASDHFASYNNMPQQGISQVGTHHDLSSSNLSASSSSKVLECMLQQEQPFNLDSIW* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0333 323 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Lan3g0333 323 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Lan3g0333 323 PANTHER BNACNNG63190D PROTEIN 2 261 - -
Lan3g0333 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 261 - -
Lan3g0333 323 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Lan3g0333 323 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0333 Lan-Chr3 2373830 2376129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0333 1 323 NAC Transcription Factor Family AT3G18400 55.422 1.39e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan3g0333 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0333 - - gmx:100780030 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0426 10 3048013 3050557 Lan3g0333 3 2373830 2376129 LSH