LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g0321	ATGACAAGTCTGTTGAAGGAAGATGAGAAAAACGAACGCATAATTCGAGGACTTCTCAAGCTTCAACACAATCGTAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTATGTACAAACTTCTGGACGTTTATTTGCGCAAACTGTGGTGGAATACACCGGGAATTTACACATCGAGTGAAATCCGTTTCAATGTCTAAATTTACTTCACAAGAAGTTAAAGCACTTCAAGAAGGAGGGAATCAGCATGCAAAAGAAATTTATTTTAAAGAATGGGATGCCCAGCATCAATCTTTCCCTGATAGCAGTAATGTTAACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGACGATTCACTGGAGAGAGGACCAATGACAAACCACCACGAGTAACAACGGATGACAAAGAAGATTCCTATGAAAACAGAAGAGTTGAGACAGATCAGGGAGGATCTAAAAGCCCTCCATTTGAACGTCGATATGATGACAGGTCTAGTTCGGGTGGAAGAAGTCCTGGATATGATGAAGAAAGTAGGCAATATGGTGATTATAAGAGAGGTTTTGGTTACCCTCCTGTAGTCAATGATTGGCGTCGCGAAGATCATAGAATATCTGAGAGCCAATCTCCTGAGCGAACCAAAGATTTGGATTCTTCAAGCTCACCTGTGGTCCGTCCTGTTAGAGATATTTTGGGAGAAAATGTAATACCTCTTCGGATAAGTGACCCTCCTAAACCAGACAGTGGAGGAGCTGCTTATGGCTCAGCACTGACGCAGAGAAATGCATCTTCCACTAGCTTGACATCCAACAATGCAAACCCAATGCCAGAAGATGTTAAGCTTGAGACTATAAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCTGCTGCTCCAGCAATTTCTCAAGCTCAACAGACTAATATGTCTCAACCTGCTGTGCAGCCAGCAAATCCCAGTGATGACAATTGGGCCTCTTTCGGTGTTGCTCCTGGGGCAAAAGCAACTCCAAGACCTGCAAATATAAATACTCTTGAATCTGTACTGTCTCAATTGTCAGTGCCAGCATCCTCACCTGCTCATGTTCCTGGAGTCCAAGGTGGTGGTCCAGCATCATCTTTTACTTTTGCTTCTGGACCTGCTAGGGTTGGCGGTTTCTCAGCTTTCCCACAAAGTGGTGCTTTAGCACCATCTCCTGGATTTACAACAGTATCACCTCTTAATAATTCAGGACAATGGGCCAATTTTCAGCATTACCAACCATTGTTCCCTGTTACAGTTAATCAGTCTACTACTCAACAATTTACACCACCAGTTGGTGGAGCTGTGAATAATCAGCCTTGGAATGCACCTTCTGTACAAAGGCATCCAAGCACACCAATGCCACATGCATATCATCATGCCTCAAAGCCCGCCAATGATACTATATCCAGTGTTGTTTCACAACCTTCCACTGTAGAAGTAAATCCAAGTGGAAGAAAAGCACTTCCTGAGGATTTGTTCACTGTAAAATATTCATCCTTCCCTGCTCCAGTTCGAGGTTGGCAAATGGGTCCTCCTCGTGGCATGGGTATCCCAATGCAATATAATAACGTGGTGCCCGTGGGAAGCTTTCCGCAGCCAACAAGGTCAACGAATCCATTTGATATTGGCAGTGAGCAAGCCCCAAATCAAGCCCCAACTTTTCCTTCCATGTCACCCTTGCAAGGTGCTCTACCTAGTGTAGCACCTTCTGTTTCAGTGCACCTGTCAGGCCCGAGTTATCCATCACATGCCTGGACTCCGCTTCCATCATCATCATATGTATCAGTCCTGCCTGCACAAGCACAAACTCATGGATTAGCTTTTGGACCAAGGGCATACATGGGACAACAAATGCCAACCAACATGGGACAACACGTCCCACCTAACATACCTATACCAATACCAAGGCAAGAATCAAATCCATATCAGCAGCTGACCGGAAATTCATCAACCAATCCCAACCCTCATCCTTTCCCTGGAGGAGGGAACCCATTTGGATGA	2037	0.4462	MTSLLKEDEKNERIIRGLLKLQHNRRCINCNSLGPQYVCTNFWTFICANCGGIHREFTHRVKSVSMSKFTSQEVKALQEGGNQHAKEIYFKEWDAQHQSFPDSSNVNRLRDFIKHVYVDRRFTGERTNDKPPRVTTDDKEDSYENRRVETDQGGSKSPPFERRYDDRSSSGGRSPGYDEESRQYGDYKRGFGYPPVVNDWRREDHRISESQSPERTKDLDSSSSPVVRPVRDILGENVIPLRISDPPKPDSGGAAYGSALTQRNASSTSLTSNNANPMPEDVKLETIKSLIDFDADPEPPAAPAISQAQQTNMSQPAVQPANPSDDNWASFGVAPGAKATPRPANINTLESVLSQLSVPASSPAHVPGVQGGGPASSFTFASGPARVGGFSAFPQSGALAPSPGFTTVSPLNNSGQWANFQHYQPLFPVTVNQSTTQQFTPPVGGAVNNQPWNAPSVQRHPSTPMPHAYHHASKPANDTISSVVSQPSTVEVNPSGRKALPEDLFTVKYSSFPAPVRGWQMGPPRGMGIPMQYNNVVPVGSFPQPTRSTNPFDIGSEQAPNQAPTFPSMSPLQGALPSVAPSVSVHLSGPSYPSHAWTPLPSSSYVSVLPAQAQTHGLAFGPRAYMGQQMPTNMGQHVPPNIPIPIPRQESNPYQQLTGNSSTNPNPHPFPGGGNPFG*	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g0321	678	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Lan3g0321	678	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Lan3g0321	678	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Lan3g0321	678	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Lan3g0321	678	PANTHER	ARFGAP/RECO-RELATED	1	678	IPR044820	GO:0005096
	Lan3g0321	678	CDD	ArfGap_AGFG	12	122	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	304	326	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	643	678	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	123	279	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	123	186	-	-
	Lan3g0321	678	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	198	216	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	293	342	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	648	668	-	-
	Lan3g0321	678	Pfam	Putative GTPase activating protein for Arf	13	124	IPR001164	GO:0005096
	Lan3g0321	678	PANTHER	ARF GTPASE ACTIVATOR	1	678	-	-
	Lan3g0321	678	MobiDBLite	consensus disorder prediction	257	279	-	-
	Lan3g0321	678	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Lan3g0321	678	Gene3D	Arf GTPase activating protein	3	134	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g0321	Lan-Chr3	2275339	2283145	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan3g0321	12	122	C2H2 Transcription Factor Family	AT4G21160	32.258	1.94e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g0321	-		-	lang:109358573	935.636