Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0308 ATGCCTAAGCCAACTCTTACACCTCCCATTGTATCGAGCGGACAATCGTCGTCATCTTATGCTCCGGCTCTACCTCCACCACCTCCGCCTTTTATTAACAGCAGTGGCGGGTCTGGATCAAACTATTCACTTGGTGAACCACATCCATCAACTCTTTCGTTGGGCTTTGTGAAGAGCACATTTTCATATGAGGAGTTGGTGCAGGCAACGGATGGCTTCTCTGATGCCAACCTTCTTGGAGTAGGTGGGTTCGGGTATGTGCACAGAGGATTTCTTCCCAATGGCAAGGAGGTAGCCGTGAAGCAGCTTAAGGTCGGAAGCAAACAAGGGGAGCGAGAATTTCAAGCTGAAGTTGAGATAATTAGCCGTGTTCATCATAAACATCTTGTTTCCTTGGTTGGATACTGCATCACTGGGATCCGGAGGCTGCTTGTTTATGAATTTGTTCCCAACAGTACATTGGAATTCCATTTACATGGAATAGGGAGACCTACAATGGATTGGCCCACAAGAGTGCGAATTGCGGTAGGGTCTGCAAAAGGACTGGCTTATCTTCACGAGGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAACATCCTTCTGGACTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGGCTTGCAAAGATATCTTCTGATATTTATACTCATGTTTCTACTCGAGTAATGGGGACTCTTGGGTACCTTGCTCCAGAATATGCTGCTACTGGAAAACTTACAGACAAATCCGATGTGTTCTCCTACGGAGTCATGCTTCTCGAGTTAATAACCGGAAGACAGCCGGTTGGTAAGAATCGATCTGACACAGACAGTTTGGTAGACTGGGCGAGGCCTTTGCTCACATGTCCTTTGGAAGAAGTTGACTTTGATTCTCTGACTGACCCAAGGCTCCAGAATGAATTTGATCCGAATGAGCTGGCTCGCATGGTGGCATGTGCTGCAGCTTGCATACGTCGTTCAGCAAAACGTCGTCCAAGGATGAGCCAGGTCCTTCGTGCTCTGGAAGGCGACGTGTCTCTAGCAGATCTTGATGAAGGAATTACACATGCATACGGTTCATTTGGAAGCACGGATTATGACGCCTCACCATACAGGGATGACATGAAAATTTTCCGAAATCCGTCATTTGGAGGAGGAAACCAGGGGTATGGTGCCAACAGTGGTTACAGTGCAGCAACAAGTGAGTATGGTTTAAACCCATCAGGCTCAAACATTGAAGCCACAAGAGAGAAGAAAATTAATATGATGAAGAATGGTAACAAAGGTTTATAA 1305 0.4605 MPKPTLTPPIVSSGQSSSSYAPALPPPPPPFINSSGGSGSNYSLGEPHPSTLSLGFVKSTFSYEELVQATDGFSDANLLGVGGFGYVHRGFLPNGKEVAVKQLKVGSKQGEREFQAEVEIISRVHHKHLVSLVGYCITGIRRLLVYEFVPNSTLEFHLHGIGRPTMDWPTRVRIAVGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKISSDIYTHVSTRVMGTLGYLAPEYAATGKLTDKSDVFSYGVMLLELITGRQPVGKNRSDTDSLVDWARPLLTCPLEEVDFDSLTDPRLQNEFDPNELARMVACAAACIRRSAKRRPRMSQVLRALEGDVSLADLDEGITHAYGSFGSTDYDASPYRDDMKIFRNPSFGGGNQGYGANSGYSAATSEYGLNPSGSNIEATREKKINMMKNGNKGL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0308 434 ProSiteProfiles Protein kinase domain profile. 73 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0308 434 SUPERFAMILY Protein kinase-like (PK-like) 53 345 IPR011009 -
Lan3g0308 434 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Lan3g0308 434 Gene3D Transferase(Phosphotransferase) domain 1 149 356 - -
Lan3g0308 434 CDD STKc_IRAK 79 347 - -
Lan3g0308 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lan3g0308 434 Gene3D Phosphorylase Kinase; domain 1 48 148 - -
Lan3g0308 434 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 15 424 - -
Lan3g0308 434 Pfam Protein tyrosine and serine/threonine kinase 78 344 IPR001245 GO:0004672|GO:0006468
Lan3g0308 434 SMART serkin_6 73 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0308 434 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 15 424 - -
Lan3g0308 434 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0308 Lan-Chr3 2092921 2098081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0308 31 422 Trihelix Transcription Factor Family AT1G70460 57.468 3.83e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lan3g0308 PK_Tyr_Ser-Thr 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0308 - - lang:109342993 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0383 10 2617820 2622051 Lan3g0308 3 2092921 2098081 LSH
Lan3g0308 3 2092921 2098081 Lan6g2238 6 32647614 32654708 LSH