Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0300 ATGACTTCCGCCGTCACTGCCGCATCAATCCTCCGTCACACCACAATCTTCCTCTCCGACGTCGTTTCACAATACGAACTCCGCCACCACCTCATCACCACTCTCCAAACCTCAACCACTCCACTCTCCGGCAATGAAACCACCGTCAAACTCGCCGCCGACACGCTCGAAGCTGCTATATCCTTTTCGACCGTACCTTCCACCCGATCCTCTTCCCTCTCTCTCGCGGAGAAGCTTCTCATTCCTCTCCCTCAACATCCTCTCTCTTCGTTCCTTCTATCTCTCACTCTCACACTCTGTAACCGCCATATCGATGCCGCTATTCCCCTCCTTCGTATATTCCATTCCTTTCCTTCTCTTTCACGATCTGAATTCGCTCCACTCCTCTTTGATCGCCTCTTCTCTTTCCATCTCGTTCCCGTTTTTCGAAGGTTCCATGATCGAAGAGCGCAGATTTTGTCGTCAAATTCGAGCGTAAAGGTGTGTGACTATGTGAGCGTTAACAGTGATAGAGAGAAATTAGAACTCAAGCTCCTCCACCCTTTGCAGAGCAATTGTGACATAGTATCATTGACCAAGGTGAGCGAAGATCAGGCTTTGAAACTGAGGGATCTGGAGAGGGAATATGAAGAGGTTCTCGATGCCAATTGTAAGGTTTTTGCGGTTTATTTCGAAGAGGTTCTAATGAGTGATGATGGAGGCATGTCAATTAGTCCACCATCGTTGGCTATGAGGAGCTTCGGAAATGGTGACAGAACAGAGAGCGACGAGGAGGTGATGGAGGAAATTGGAATGCCTGAGTTGAAGAACAACCGATATAATCCAATTTGGACCGAAAGGGAAACATCCATCGATTTTTTAAGAAATAGTTCTAGCAGCAACAGTTCCCCCCATGTACCACTTTATCCTGAAAGAGTCTCTCCTAGACTCCTCAAACCCCAAAAATCTCCAGAAAATTTGAAGTCACCAGTCTATTTAAAATCAGCTGCAGAACCCAATTCGTGTTTGGATAAGAATTTGCACTGTTCTTCTTCAGAATCTGAGGTGGATGGTGAGGTATTTGATACTACCAATAGGAAAACAAACCCAATGAGGACTGAGGGCAAATATTTGTATATACCTTTTTATCCTGACTCACCCAGAATTCTCGAACCCCAAAATTCTTCAGAAAATTTGACAGTGCCACTTCACTTAAACTCAGATGCTGAACCCTACTCTTCATTAGATGACAATTTGCCTTCTTCATCTTCAAAATCTGAAGCAAAAAGTGAGGAAAACGATGAAAATATGGTGCTGGTGGAGCCTCGGCAGGGCCAAATCCATTTGCAAACCAATTTTACAGAACTCACGGGTTCCATGGATTATCCCATCTCTGGCTACAATAGCCCACCACAAGGAAGTTATAAACAAGCACCACCTGATGACTTTGTTTGTCCAATAATCAGTAACCTGTTTGATGATCCGATGACCCTTGAGACAGGTCAATCATATGAACGTCGAGCGAGGGAAAAATGGTTCAATATAACTAAAACCAATTATGTGCTCAAACAACTAATTGAGAGCTGGAAAGAGCAAAACCTGGACTCGAGTGACATTCCAAATGAAGAGGCTGAGCCGGTAGTGCCATCACTAGTGACTTCTACTTCTCCTAACAGTGCTATATCACGAGACATAGGTCATGGAAAAAGTGAGTTACATCATGCAGTGAACAACCTGCTTATGTCAGAGGTTCTTGAGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGTTGTGGAGAGAAGAAGTGAATCAAAGAGGTGATATCCAGACAATGCTATCAAAACCTCCAATCATCAATGGATTTATGGTGATTCTTTTTTATTCTGTTGATCCAAAGGTGCTACAAGCAGCAGTTTTCCTACTGACAGAGATGGGTTCTAGCGACAGTACTGTTATTGAGTCTCTTACACGGGTGGACACTGATGTAGAATGTATCATGGCTCTTGTCAAGAAAGGATTGGTAGAGGCTGTGGTATTGATATACCTCCTAAAACCTTCCACTACGAGTCTTACAAGGATGGTGGTAGTGGAGGATCTCGTAACAGTTCTCGATAAGGAGGAAGAAGAGTTGCTTGAGATGTCTATAAATCCCAAAACAGCTGCAGTACTTTTACTAGCACAGGTTATGGGAAGCAGTGATCAGGAAATTGTATCTTCCGTTGCCAAGGCTGTACTATTCTCTGAAAAAGCAATTGGGACTGTTGTTGACAGTTTGGGGGCTGAGTGGGTAGATGAGAGGATTGCTTCAGTTGAGATCTTATTGAAATGCATGCAAGAAGATGGGACTTGCAGGAACTTCATTGCTGATAAAGCAGAACTGTCCACTATTTTAGAAAGCTTCATATGTGCAACTGACAAAGAACGTTTTAAGATAATTCAGTTTTTTTCTGAGTTGGTCAAATTAATTAGGAGGACATATAATGAACAAATCCTTAACATAATAAAGGATGAAGGTCCTTTCAGTACAATGCATACTCTCCTCACTTATCTGCAGACAGCCCTTCAAGACCAGTGTCCAGTAGTGGCTGGTTTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAAAAAGAAGAGCATATACTGTGAAGAGGCTATAGATACTCTTATTTCATGCTTGAGAAACAGTGACTTCCATGTTGTCCAGTTAGCAGCTGCTGAGACAATCGTTTCATTGCAAGGGAGGTTCAACTTAACTGGAAAACAACTTACTAGAGAAGTGCTTCTTGAACGTGCCGGTCTTGACACCAGCTATAGAAACCTTATACAGATGGATCAGATCAACAATTTCTGCGAAGGAATTAAAGAATCTATAAAAGAAGAGACTGCTGCTGATGACTGGGAAAGAAAAATTGCATATGCTCTAGTTAGCCATGACTCTGGTATACTTTTTGAGGCTTTAGCAGATGGCTTGATGAAGAGCCAAAGTGCAGAACTAAGTGCAGCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTATTCTACCAGATACAGGAATACAAGGGGTAGCCCGTGCCTGCTTTCTCAAGCGTTTTGTTTCAATATTAAAATCTGCTGTGGACATAGAGGACAGAATCCTTTCAATGCTTGCTCTAAAAAGCTTTCTTCACTTTCATGATGGCTTACATGAACTAACTTCCTATGCAAAGGATATTTTAAAAGCATTGCGGGAGCTAAAGAGATTCTCCCCCATGGCATCTGAAATGATGAAGGTTCTGGTTAAAGAAAATGAACCTAAAGCAGAAATCTGGATATATAAAGAGCTAATTCAAGTAGATTGCAAAGGGAATGGACAAGTGCTGTCTGTCATTTTCTTAAAAGAAAAACTTTTCTCTGGTCATTCAGACGGAACTATTAAGGTCTGGAAAATACAGGATAGCTTAATCCATCTCTTGCAAGAGACTCAGGAACATATGAAGGATGTTACAAGTTTGGCAATTTCAGAATCTGGTGACAGACTATACAGTGGTTCCCTTGATCGAACAGTAAAGGTCTGGTTCATTGGAAAGGCAGGGATACATCATATACAGGTGCACGATATGAAGGACCATATTCATAATTTAGTTGTAACTAGCAGCATGTGTTGCTTCATTCCTCAAGGCACTGGTATAAAGGTTCTACCATGGAATGGAGAATCAAAATTGTTGAACACTAATAAATATGTGAAGTGCATGACTGGTGTTAATGGGAGATTATACTGTGGGTGCCAAGACAATACTGTTCAGGAGGTAGATTTGGCCAAAGGAACATTCAGTACCATCCAATCCGGTTCCAAAAAATTACTTGGGAGAGCAAATCCTATTCATGCACTGCAAGTTCATGGTGAATTTATTTATGCTGCTAGCTCTTCCTTGGATGGATCTGTTATAAAGATATGGAACACAACCAATTACAGTGTGGTTGGATCACTGCAAACCACATTAGAAGTGCGGGCTATGTTAGTAGGCTCAGAGTTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTTGGATAAGAAGAAACACAATAGAGTTAACACATTAATGATGGGTACTACTTCTAAAGTTCTCTGCATGGCTTTAGATAGCAATGAAGAAATTTTGGTGGTTGGAACTCCTGATGGCCAAATTCAGGCATGGGGGATCAAATGA 4182 0.4187 MTSAVTAASILRHTTIFLSDVVSQYELRHHLITTLQTSTTPLSGNETTVKLAADTLEAAISFSTVPSTRSSSLSLAEKLLIPLPQHPLSSFLLSLTLTLCNRHIDAAIPLLRIFHSFPSLSRSEFAPLLFDRLFSFHLVPVFRRFHDRRAQILSSNSSVKVCDYVSVNSDREKLELKLLHPLQSNCDIVSLTKVSEDQALKLRDLEREYEEVLDANCKVFAVYFEEVLMSDDGGMSISPPSLAMRSFGNGDRTESDEEVMEEIGMPELKNNRYNPIWTERETSIDFLRNSSSSNSSPHVPLYPERVSPRLLKPQKSPENLKSPVYLKSAAEPNSCLDKNLHCSSSESEVDGEVFDTTNRKTNPMRTEGKYLYIPFYPDSPRILEPQNSSENLTVPLHLNSDAEPYSSLDDNLPSSSSKSEAKSEENDENMVLVEPRQGQIHLQTNFTELTGSMDYPISGYNSPPQGSYKQAPPDDFVCPIISNLFDDPMTLETGQSYERRAREKWFNITKTNYVLKQLIESWKEQNLDSSDIPNEEAEPVVPSLVTSTSPNSAISRDIGHGKSELHHAVNNLLMSEVLEESEMAVLQIEKLWREEVNQRGDIQTMLSKPPIINGFMVILFYSVDPKVLQAAVFLLTEMGSSDSTVIESLTRVDTDVECIMALVKKGLVEAVVLIYLLKPSTTSLTRMVVVEDLVTVLDKEEEELLEMSINPKTAAVLLLAQVMGSSDQEIVSSVAKAVLFSEKAIGTVVDSLGAEWVDERIASVEILLKCMQEDGTCRNFIADKAELSTILESFICATDKERFKIIQFFSELVKLIRRTYNEQILNIIKDEGPFSTMHTLLTYLQTALQDQCPVVAGFLLQLDLLVEPKKKSIYCEEAIDTLISCLRNSDFHVVQLAAAETIVSLQGRFNLTGKQLTREVLLERAGLDTSYRNLIQMDQINNFCEGIKESIKEETAADDWERKIAYALVSHDSGILFEALADGLMKSQSAELSAACFISATWLIYMLTILPDTGIQGVARACFLKRFVSILKSAVDIEDRILSMLALKSFLHFHDGLHELTSYAKDILKALRELKRFSPMASEMMKVLVKENEPKAEIWIYKELIQVDCKGNGQVLSVIFLKEKLFSGHSDGTIKVWKIQDSLIHLLQETQEHMKDVTSLAISESGDRLYSGSLDRTVKVWFIGKAGIHHIQVHDMKDHIHNLVVTSSMCCFIPQGTGIKVLPWNGESKLLNTNKYVKCMTGVNGRLYCGCQDNTVQEVDLAKGTFSTIQSGSKKLLGRANPIHALQVHGEFIYAASSSLDGSVIKIWNTTNYSVVGSLQTTLEVRAMLVGSELIYLGCKGGAVEILDKKKHNRVNTLMMGTTSKVLCMALDSNEEILVVGTPDGQIQAWGIK* 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0300 1393 MobiDBLite consensus disorder prediction 404 419 - -
Lan3g0300 1393 SUPERFAMILY WD40 repeat-like 1112 1392 IPR036322 GO:0005515
Lan3g0300 1393 MobiDBLite consensus disorder prediction 400 432 - -
Lan3g0300 1393 Gene3D - 1216 1393 IPR015943 GO:0005515
Lan3g0300 1393 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 361 - -
Lan3g0300 1393 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 373 1392 - -
Lan3g0300 1393 Pfam WD domain, G-beta repeat 1148 1181 IPR001680 GO:0005515
Lan3g0300 1393 Coils Coil 195 215 - -
Lan3g0300 1393 SMART Ubox_2 475 522 IPR003613 GO:0004842|GO:0016567
Lan3g0300 1393 SUPERFAMILY RING/U-box 462 526 - -
Lan3g0300 1393 Pfam U-box domain 473 507 IPR003613 GO:0004842|GO:0016567
Lan3g0300 1393 ProSiteProfiles Trp-Asp (WD) repeats profile. 1359 1393 IPR001680 GO:0005515
Lan3g0300 1393 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 361 - -
Lan3g0300 1393 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 373 1392 - -
Lan3g0300 1393 Gene3D - 1097 1211 IPR015943 GO:0005515
Lan3g0300 1393 Gene3D - 568 1085 IPR011989 -
Lan3g0300 1393 SUPERFAMILY ARM repeat 26 1073 IPR016024 -
Lan3g0300 1393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1150 1181 - -
Lan3g0300 1393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1359 1393 - -
Lan3g0300 1393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 527 IPR013083 -
Lan3g0300 1393 ProSiteProfiles Trp-Asp (WD) repeats profile. 1150 1181 IPR001680 GO:0005515
Lan3g0300 1393 SMART WD40_4 1273 1309 IPR001680 GO:0005515
Lan3g0300 1393 SMART WD40_4 1351 1391 IPR001680 GO:0005515
Lan3g0300 1393 SMART WD40_4 1101 1138 IPR001680 GO:0005515
Lan3g0300 1393 SMART WD40_4 1140 1182 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0300 Lan-Chr3 2039440 2049361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0300 437 526 U-box Gene Family AT1G27910 33.028 4.07e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0300 - - lang:109342256 2688.29