Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0298 ATGGAAAAAACCTCTGAAAAGTTCTCTCAGAGAATTAAAATCACTAGCAGCAGTGGCTTAAACCTTAAGGCTACTGAACTAAGATTAGGCTTACCTGGTTCTGAGTCACCAGAGAGAAAAGATGAGAATAATGTTATGTACCCTTTAAGTCTGCACAACAAGTGTTTGGTCTCTGGTGCCAAAAGGGGTTTCTCAGATGCCATTGATGGTGGTTCTGGCAAGTGGATTCTCTCTGGAAATGGTGATTCTGAGGTGGGTTTGGGTAAAGATGGTAACTTGTTCTCTCCTAAGGGTGTTATTGCTGCTAAGGCTCTTGTTGGAGCTGAGTGTACTAATCAACAAAAAGTAGCTGGTGTGAAAGATAAAGTTCCTCACTCATCAAAGGAACAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTATTCAGCCTCGAAAGAATGATGATGATGATGCCGAAACCATGTCTGGTTGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCTTATTTGAGGAAAGTAGATCTCAAAAACTTTGGCACTTACAGAGAACTATCTTCAGCACTGGAAAAAATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTCATAAGATGAGTGAAATCCGATTGATGGATCTCCTCCACGGTTCGGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGGGATGTTCACTAACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGGTATTCAGTTTTATCAATCTAGGATTCTGTTTTCCAATTTGTATATGTGA 846 0.409 MEKTSEKFSQRIKITSSSGLNLKATELRLGLPGSESPERKDENNVMYPLSLHNKCLVSGAKRGFSDAIDGGSGKWILSGNGDSEVGLGKDGNLFSPKGVIAAKALVGAECTNQQKVAGVKDKVPHSSKEQVVGWPPIRSFRKNSMAIQPRKNDDDDAETMSGCLYVKVSMDGAPYLRKVDLKNFGTYRELSSALEKMFSCFTISQCGSHKMSEIRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFTNSCKRLRIMKSSEAIGLGIQFYQSRILFSNLYM* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0298 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 269 IPR003311 GO:0005634|GO:0006355
Lan3g0298 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 11 269 - -
Lan3g0298 281 Gene3D - 157 271 - -
Lan3g0298 281 ProSiteProfiles PB1 domain profile. 163 259 IPR000270 GO:0005515
Lan3g0298 281 Pfam AUX/IAA family 25 266 IPR033389 -
Lan3g0298 281 SUPERFAMILY CAD & PB1 domains 158 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0298 Lan-Chr3 2016148 2018760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0298 136 271 B3 DNA Binding Superfamily AT1G34170 30.282 9.95e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan3g0298 AUX_IAA 2.5e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0298 K14484 - gmx:100803754 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0373 10 2536347 2539856 Lan3g0298 3 2016148 2018760 LSH
Lan6g2230 6 32604263 32607633 Lan3g0298 3 2016148 2018760 PCT
Lan3g0298 3 2016148 2018760 Lan6g2230 6 32604263 32607633 PCT