Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0295 ATGGAACGCATCATCGGCGCCAAGTACAAACTCGGCCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCCACTCATATTGATACCTTCGAGATTGTAGCTATTAAGATCGAGAACGGTAAAACGAAGCATCCACAATTGCTTTATGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTTTGGTGTCGATGCAGAGGACAATGCGCTGGTTATCGATTTACTCGGGCCCAGCCTTGAGGATCTTTTCGTTTACTGTGGAAGAAAGTTCTCATTGAAGACCGTGTTGATGCTGGCTGATCAAATGATGAACAGAATAGAATATGTGCACTCAAAAGGATTCCTACACAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTATATCATTGACTTTGGGCTTGCAAAACGATACCGGGACTCCTCAACCAATCGTCACATTCCCTACAGGGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGCCGACGGGATGATTTGGAGTCATTAGGATATGTGCTTTTATACTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTGAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGCGAGAAGAAAGTATCAACTCCTATTGAGGTGTTATGCAAATCTCACCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCACTCTCTGATCTTTGATCAGCGTCCTGATTATGGATTCTTGAAGCGCCTATTCCGTGACCTATTTACTCGTGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATCTTAAAGTATCAGCAGTCACAAAAGAATAGAGTCCAGCAACGCATATCTCCTGTCCCTGGAGCTAGCAACAATCGTGCAATGCCAATGGATCTTGACAACCATCAGGGGGACATCTCAGGGCGCATTAGGTCTAGCAATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAGTCATCTGTGGGTAAAAATTTGGGTCCTGAAAATCCTCTTGGCAAGAATATTTTTGGTGAAGCGAATGTACCCTCTACTTCATTTTCTCTTGCTGGTACCTCAAGAAGGAATTCCTTGAAGCCCGCCATGCCAACTGAAGCTGCCAACCATGTACATGGGCAAGGAAGTCCCTTCAAGTAG 1227 0.4352 MERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAIKIENGKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDAEDNALVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMNRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLIFDQRPDYGFLKRLFRDLFTREGYEFDYVFDWTILKYQQSQKNRVQQRISPVPGASNNRAMPMDLDNHQGDISGRIRSSNATGSGVKIQFKSSVGKNLGPENPLGKNIFGEANVPSTSFSLAGTSRRNSLKPAMPTEAANHVHGQGSPFK* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0295 408 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan3g0295 408 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0295 408 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lan3g0295 408 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0295 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan3g0295 408 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 399 - -
Lan3g0295 408 PANTHER CASEIN KINASE-RELATED 1 399 - -
Lan3g0295 408 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Lan3g0295 408 CDD STKc_CK1_delta_epsilon 8 282 - -
Lan3g0295 408 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0295 Lan-Chr3 1988385 1992449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0295 9 230 EF-hand Containing Proteins AT3G20410 30.043 1.73e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan3g0295 Pkinase 1.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0295 K08960 - gmx:100805890 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1121 6 11000910 11005730 Lan3g0295 3 1988385 1992449 PCT
Lan3g0295 3 1988385 1992449 Lan6g1121 6 11000910 11005730 PCT