Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0292 ATGAATGAACTTAGTATAACCCTTTTGTCTCTCTGTGTCTTATTCTTCCATCATGTTACAGCACAAAACACTACAGATGATGCTGTCTCTAATTTCCAACCAAGTCTTGCTGTTGTTATAGCAGTCCTTGGTCTCATGTTTTCACTGACATTCATTCTTCTTATGTATGCCAAATTCTGTCAAAGAAATACTTCAGTTCCTGTCTTAGACCCTGAAAACCAACCAACACTTGTAAGATCAAGGTCTAGATTCTCAGGAATAGACAAAACAGTCATAGAATCACTTCCATTCTTTAGATTTTCTTCTCTCAAAGGGTCAAAAGAAGGTCTTGAATGTGCAGTGTGTTTATCAAAGTTTGAAGATGTTGAAATTCTGAGGCTGTTACCAAAGTGTAAGCATGCTTTTCATACTGATTGCATAGATCATTGGCTTGAGAAACACTCAAGTTGTCCTATTTGTAGACACAAGGTTAATCCTGAGGACCAAACAATCTTAACATATTCAAATAGTTCAAGGTTGCAAGCAAATCCTTCAGGACTTGGTGAAGATTCTAGTAACATAGAGCTTTTTGTTCAAAGAGAGGAACAACAACAACAACAACAACAACAACATGGTTCATCAAGGTTTAGTATTGGAAGCAGCTTCAGGAAAATAATTGGAATGGATATTAAGGAAGAAGAGTTGTTTATCCAAAAGGAAATAGAAGAAGATAGTGAAAAGGGTTATCATAAGCATAACCATAAGATTACTATATCTGATATTGTGTTTAACCATAGGTGGAGCAATGTTAGTTCTTCAGACCTTATGTTTTTGAATACTGAGATGCTTAATGCTAATTCAAGCAATAGATTCAATGACTTGGAATCAAGTTCTGAATTTATGGCCACAAGGGTGGTTGAAAATGAGGAAATTATGAACATGAACAAGGATAAATCAGTTTCAATTTCAGATGAGGACCCTCTTTTTGCATCATCATATTCTTCTGTAGGAAATTCAAGCCATGCACCAAAGTATATGAACCAAGGTGAGAAAAGATCAATGTCAGAAATCACTGGTGTCTCTAGATTTGGAGGTTCAAGCATGAAAAATAAGGTGTTTAGAGATTCTTCTTTGTTTGAAAACAACCTTAAAAGGGAAAGAACAAGACAACTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAACAAAGTCTCAGCAATCTCAGAATAAACAAAAGTCATTAGATGTATAG 1248 0.3518 MNELSITLLSLCVLFFHHVTAQNTTDDAVSNFQPSLAVVIAVLGLMFSLTFILLMYAKFCQRNTSVPVLDPENQPTLVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHTDCIDHWLEKHSSCPICRHKVNPEDQTILTYSNSSRLQANPSGLGEDSSNIELFVQREEQQQQQQQQHGSSRFSIGSSFRKIIGMDIKEEELFIQKEIEEDSEKGYHKHNHKITISDIVFNHRWSNVSSSDLMFLNTEMLNANSSNRFNDLESSSEFMATRVVENEEIMNMNKDKSVSISDEDPLFASSYSSVGNSSHAPKYMNQGEKRSMSEITGVSRFGGSSMKNKVFRDSSLFENNLKRERTRQLWFPIARRTVQWFVNRETKSQQSQNKQKSLDV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0292 415 SMART ring_2 112 153 IPR001841 -
Lan3g0292 415 SUPERFAMILY RING/U-box 91 160 - -
Lan3g0292 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 410 - -
Lan3g0292 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 163 IPR013083 -
Lan3g0292 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 410 - -
Lan3g0292 415 Pfam Ring finger domain 111 154 IPR001841 -
Lan3g0292 415 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lan3g0292 415 CDD RING-H2_PA-TM-RING 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0292 Lan-Chr3 1973713 1975194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0292 27 410 C3H Transcription Factor Family AT4G28890 46.455 6.42e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0292 K10664 - gmx:100803207 523.472