Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0290 ATGGGTGAGGCTCCTAGGTCAGAAATTGAAACAAGAACCACACACTACTCTTCTTCTTCTTCAACTTCAATTTCAAAACTTCAACAGAAGAAACGATCAAGAGATAACAGCAACAACAACATATACAGAGGGGTCCGAATGCGCGCGTGGGGGAAATGGGTATCCGAAATCCGTCAACCGCGAAAGAAGAACCGTATCTGGCTTGGCACCTTCGCCACCCCTGAGATGGCGGCGCGTGCACACGACGTCGCTGCTCTAACCATCAAGGGTTCCTCTGCTATCCTCAACTTTCCAGAACTTGCTCCTTTGTTTCCTCGACCAGCTTCTAACTCGCCACAAGATGTTCAAGCCGCTGCTGCCAAAGCCGCTTCCATGGAGCCTCCTCTTCCACCGTCATCGCCGCCACTGTCTTCATCTTCATCTTCTTCTTCCTCTTTTTCTTTGGTAGCGCTGACGGAGGAAGAGGAACTGGGTGAAATACTGGAGTTGCCAACGTTAGGTAGTAGTTTTGAATCACCCGAGCCGAGTAACGAGTTGGTGTATTTTGAGTGGCCCTATATTCATGATGATAATTATATTATATCATTGGAAGACTCAGACTCAGATATTATGGTTCTTTAG 621 0.475 MGEAPRSEIETRTTHYSSSSSTSISKLQQKKRSRDNSNNNIYRGVRMRAWGKWVSEIRQPRKKNRIWLGTFATPEMAARAHDVAALTIKGSSAILNFPELAPLFPRPASNSPQDVQAAAAKAASMEPPLPPSSPPLSSSSSSSSSFSLVALTEEEELGEILELPTLGSSFESPEPSNELVYFEWPYIHDDNYIISLEDSDSDIMVL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0290 206 MobiDBLite consensus disorder prediction 1 40 - -
Lan3g0290 206 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Lan3g0290 206 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Lan3g0290 206 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Lan3g0290 206 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Lan3g0290 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 188 - -
Lan3g0290 206 MobiDBLite consensus disorder prediction 106 141 - -
Lan3g0290 206 Pfam AP2 domain 42 90 IPR001471 GO:0003700|GO:0006355
Lan3g0290 206 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Lan3g0290 206 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Lan3g0290 206 MobiDBLite consensus disorder prediction 11 27 - -
Lan3g0290 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 188 - -
Lan3g0290 206 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0290 Lan-Chr3 1954737 1955374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0290 28 192 AP2-EREBP Transcription Factor Family AT5G11590 57.065 3.86e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan3g0290 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0290 K09286 - gmx:100778201 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1127 6 11050107 11051590 Lan3g0290 3 1954737 1955374 PCT
Lan3g0290 3 1954737 1955374 Lan6g1127 6 11050107 11051590 PCT