Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0269 ATGACTGATCCCTACAACTCCAATGACCTCAATGGTTGGTTTGACCTAAATTCTCCCAACCTTTTCTCTTCTTCATCATCATCATCATCTTGTTCCAACCCACCATTCTATTTCCCTTCTAGTTATTATCATCATCATCATCATCATAACATCACAAGTGGCATGATCTCTTTTACTCATCATCATCATATGCATCATCACCAATCTTCTCATCATGATCCCTCTTCTCCTCCTCCAAGAGAAGCTCTTCCTCTCCTTAACCTAAGCCCTACAAAACATGGTGAAGATCTTGAAACTTCCTTCAGTTCCATGGAAGTGGACAACAACAATAACAGCAAAGAAAAACCTATAAGCTTTTTGGATCATGATGAGGATACTACTGTGACTGTGGCTTTGCACTTAGGGCTTCCAAGCACAAGTACAACTTTAACTGATTTAGCTTCTTCAAACATATTCAACACAGAGATTTCAGAGAAAGATGATGAAAAGGTTACTGTTGATTCTTCTTCTGAGTATCCATCATCAAGTAGAATTAGTAGGGGTCAGTTTTGGATCCCTACCCCATCTCAAATTCTGATTGGTCCAACACAGTTCCCATGTCCCCTTTGTTTCAAGACGTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTTAGACTCCCTTGTTATTGTTGTGCACCAGAATGCAAGAACAACATTGATCATCCAAGAGCAAAGCCACTCAAAGATTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTATGGTATTGTTCTTGTGGTTCTGACTTTAAGCACAAAAGATCTCTTAAGGATCATATAAAGGCATTTGGAAATGGACATAAAGCTTATGGAATAGATTGTCTTGATCAAGATGATGAAGGTGGCTCTGAAATTGAGCAAGAAAGTGAGTCTCTTCGGTTATAG 1083 0.3943 MTDPYNSNDLNGWFDLNSPNLFSSSSSSSSCSNPPFYFPSSYYHHHHHHNITSGMISFTHHHHMHHHQSSHHDPSSPPPREALPLLNLSPTKHGEDLETSFSSMEVDNNNNSKEKPISFLDHDEDTTVTVALHLGLPSTSTTLTDLASSNIFNTEISEKDDEKVTVDSSSEYPSSSRISRGQFWIPTPSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEGGSEIEQESESLRL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0269 360 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Lan3g0269 360 MobiDBLite consensus disorder prediction 61 111 - -
Lan3g0269 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Lan3g0269 360 MobiDBLite consensus disorder prediction 93 111 - -
Lan3g0269 360 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Lan3g0269 360 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 358 - -
Lan3g0269 360 Gene3D Classic Zinc Finger 197 220 - -
Lan3g0269 360 PANTHER ZINC FINGER PROTEIN WIP2 1 358 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0269 Lan-Chr3 1809026 1812052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0269 1 353 C2H2 Transcription Factor Family AT1G51220 55.707 8.63e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0269 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0269 - - gmx:100789416 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2191 6 32286024 32288783 Lan3g0269 3 1809026 1812052 LSH