Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0260 ATGGATTCGGAGGATGATATGCACGATGCTAACGACGTGGAGTATCTCGATGACGATTTCTACAGTGGCGAAACCGAAGATGCTCCAATGGATTACTACAGTGACTACGATGATGACGCCGATGATTACTTCGATGACGCTGATTATTCCGGCAGGGTTGAGTCTCGTCGTGCTGAGCAAAATTTCACCATATTGAAGGTATCGGATATCCAGCAAAGGCAGGAAGATGACATCAATAGAGTATCTGCGGTTCTGTCCATATCACGGGTTTCTGCGAGCATCCTACTTCGTCATTACAATTGGAGTGTCACCAAAGTTCATGATGAGTGGTTTGCTGATGAAGATCGAGTTAGGAAGACAGTTGGTTTGTTGGAGAGACCTGTTGTCCAGCATGCCAATACTACAGAGCTTTCTTGCGGCATCTGTTTTGAAACCTATCCTCGTGCCAGGATAGAAACTGCTTCTTGTGGTCATCCCTACTGTATTTCATGCTGGGAAGGTTATATTAGCACATCAATTAAAGACGGTCCTGGAAGTTTGACGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGTATCTGATGAAGATAAAGAGAAGTATGCTTGTTACCTTCGTCGCTCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTCAGTTTTGGTGTTGGCAATGGAAATTATGATGTATCTTGCCTCTGCTCATATAGTTTTTGCTGGAATTGCATTGAGGAGGCTCACCGTCCGGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAACCAAGGATGCATGCACATTACTTGTACACCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTAGGTGCATGGTCAGACCATGGGGAAAGGACTGGTGGTTTCTATGCGTGCAACCGTTATGAGACAGCTAAACAAGAAGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCACGACAAAAAGCTCTTTCAGATCTGCACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGTCAGCCTGAATCACAGCTTAAGTTCATTACCGAGGCCTGGCTACAGATAGTTGAATGCCGGCGGGTGCTGAAGTGGACATATGCATATGGATACTATTTACCTGAGAATGAACGTGCTAGAAAACAGTTCTTTGAGTATCTGCAAGGTGAGGCAGAATCTGGTCTGGAGAGACTTCACCAATGTGCCGAAAAGGAACTACAGGTATTCCTTGATGATGAAGACCCATCAAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTAACTAGAAACTACTTTGAGAATCTAGTTACGGCATTAGAGAATGGTTTAACTGACGTGAAAGGTAATGGAGCTAATTCCAGCAAAGCAACGAGCTCAAAAAGTGCTGCCGGGAGCAGTAAGAGATTTGGAAGAGGAAAGGGAACTATTCGAGCTAGCATGTCCAGCAGAATGAGTGATGATAATCTTTGGTCCTGTGAGCATTGTACCTATGCAAATGCCAAATCTGCAACTACATGCCGGATGTGCAATCAACAGCGTCGATGA 1770 0.4401 MDSEDDMHDANDVEYLDDDFYSGETEDAPMDYYSDYDDDADDYFDDADYSGRVESRRAEQNFTILKVSDIQQRQEDDINRVSAVLSISRVSASILLRHYNWSVTKVHDEWFADEDRVRKTVGLLERPVVQHANTTELSCGICFETYPRARIETASCGHPYCISCWEGYISTSIKDGPGSLTLRCPDPTCGAAVGQDMINLLVSDEDKEKYACYLRRSYIEDNKKTKWCPAPGCEYAVSFGVGNGNYDVSCLCSYSFCWNCIEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPENERARKQFFEYLQGEAESGLERLHQCAEKELQVFLDDEDPSREFNDFRTKLAGLTSVTRNYFENLVTALENGLTDVKGNGANSSKATSSKSAAGSSKRFGRGKGTIRASMSSRMSDDNLWSCEHCTYANAKSATTCRMCNQQRR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0260 589 MobiDBLite consensus disorder prediction 522 555 - -
Lan3g0260 589 SUPERFAMILY RING/U-box 289 337 - -
Lan3g0260 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Lan3g0260 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Lan3g0260 589 Gene3D - 559 589 - -
Lan3g0260 589 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Lan3g0260 589 SUPERFAMILY RING/U-box 208 277 - -
Lan3g0260 589 Pfam Ariadne domain 357 518 IPR045840 -
Lan3g0260 589 SUPERFAMILY RING/U-box 135 220 - -
Lan3g0260 589 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Lan3g0260 589 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Lan3g0260 589 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Lan3g0260 589 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Lan3g0260 589 MobiDBLite consensus disorder prediction 1 31 - -
Lan3g0260 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Lan3g0260 589 SMART zf_4 563 587 IPR001876 -
Lan3g0260 589 Gene3D - 266 521 - -
Lan3g0260 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 221 IPR013083 -
Lan3g0260 589 ProSiteProfiles Zinc finger RanBP2 type profile. 561 589 IPR001876 -
Lan3g0260 589 SMART ibrneu5 208 270 IPR002867 -
Lan3g0260 589 SMART ibrneu5 274 344 IPR002867 -
Lan3g0260 589 SUPERFAMILY Ran binding protein zinc finger-like 561 588 IPR036443 -
Lan3g0260 589 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0260 Lan-Chr3 1698556 1706088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0260 17 588 ARIADNE family AT1G65430 69.483 0.0 825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2175 6 32146810 32155445 Lan3g0260 3 1698556 1706088 LSH
Lan3g0260 3 1698556 1706088 Lan7g0197 7 1194288 1200430 PCT
Lan3g0260 3 1698556 1706088 Lan13g0288 13 1853329 1859752 PCT
Lan7g0197 7 1194288 1200430 Lan3g0260 3 1698556 1706088 PCT
Lan13g0288 13 1853329 1859752 Lan3g0260 3 1698556 1706088 PCT