Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0241 ATGGAAGCTCCAGGTAGGTCAGTTGAAGAAATCTTCGAAGATTTCAAAGGCCGTAGAGCTGCAATCATCAAAGCCCTTACCACAGATGTTGCTGATTTCTACACCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCACTGGGAAGTAAATTTACCCGTAGAAGAAGTTCCCCCGGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGAATGCAAGAAAAAGACTGGTTGTCTTTAGTTGCTGTTCATAGCGATAGTTGGTTGCTTGCCCTTGCCTTCTATTTTGGAGCCAGATTTGGTTTCGACAAAGCTGACAGGAGACGACTGTTCAATATGATGAATGAACTACCAACAATATTTGAAGTTGTCACTGGGACTGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAATAACAGTGGCAGCAAATCCAAGTCCAGCTCTAAAGCGCGAGCTGCTGAGGCTCAGGGTAGGCCGTCAAAGGCATTGCAACCAAAAGATGAGGACGAAGGAGTGGAAGAGCAAGATGAAGATGAGCATGGAGACACCTTGTGTGGGGCATGCGGTGAGAATAATGGTACCGATGAGTTCTGGATTTGCTGTGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAAAATCACCCCGGCTAGGGCAGACCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAA 750 0.456 MEAPGRSVEEIFEDFKGRRAAIIKALTTDVADFYTQCDPEKENLCLYGLPNEHWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLALAFYFGARFGFDKADRRRLFNMMNELPTIFEVVTGTAKKQVKEKSSVSNNSGSKSKSSSKARAAEAQGRPSKALQPKDEDEGVEEQDEDEHGDTLCGACGENNGTDEFWICCDICERWFHGKCVKITPARADHIKQYKCPSCSSNKRAR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0241 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Lan3g0241 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Lan3g0241 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Lan3g0241 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Lan3g0241 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Lan3g0241 249 MobiDBLite consensus disorder prediction 141 164 - -
Lan3g0241 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Lan3g0241 249 Pfam PHD-finger 196 244 IPR019787 -
Lan3g0241 249 MobiDBLite consensus disorder prediction 141 190 - -
Lan3g0241 249 CDD PHD_AL_plant 195 245 IPR044104 -
Lan3g0241 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Lan3g0241 249 SMART PHD_3 195 243 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0241 Lan-Chr3 1567680 1571105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0241 6 249 Alfin-like Transcription Factor Family AT3G42790 74.180 4.52e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan3g0241 Alfin 2.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0241 - - gmx:100170696 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2156 6 32000550 32003730 Lan3g0241 3 1567680 1571105 LSH
Lan10g0301 10 1977703 1981440 Lan3g0241 3 1567680 1571105 LSH
Lan3g0241 3 1567680 1571105 Lan2g0455 2 5003557 5009025 PCT
Lan2g0455 2 5003557 5009025 Lan3g0241 3 1567680 1571105 PCT