Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0229 ATGGATTATTACCCTTTTCAACACTCTCATTCAGAATCTCACAATGGTGACGAAATTGTTCTTCAAAACCATCAATTTAATCCACCACCCCATAATTTTCATGCTAATCATGATCACTACATTCATAACGTAAACCACTCTTTCAATCGTCACGATTCGCTTTCAGGGAAGCTTTTTGTTGGAGGCATTTCTTGGGAAACTTCTGAAGAGACATTTTTTAAATACTTCAACAAATTTGGAGAAGTAGTAGATTCAGTGATAATGATGGATAAACACTCTGGAAGGCCAAGAGGGTTTGGCTTTGTAACATTTACTGATTCAGCTGTTGCAGATAAAGTTTTGGCACAGGAGCATACCATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTCCCTAGGGGGGACATGGAAGCTACTGCAGTCTTTAGAACGAAGAAAATCTTTGTCGGTGGAATACCCCAGTTTTTAACAGATGATGAGTTGAAGGAATACTTTTCACCTTATGGGAATATTGTTGAGCACCAAATCATGCTAGATTATCAGACTGGGCGCTCTAGAGGCTTTGGATTTGTCACTTTTGACAGTGAAGATTCAGTGGAAAAGGTTGTTTCAGCGGGAATAATACATGAACTTGGAGGCAAGCAGGTTGAAATTAAGAGAGCCGAGCCCAAACGATCTGGAGTTGATTACAGCAGCACCTCACGAAAGTCATATGTTGGTTTCGGCAATGAAATGAATGGATTTGGTGGTCATAATTCTAGAGGTCATAATATTGGAAGAAGAGGTGGACCATATACAGATTCTGGCATGAATGGGGCATATAGCCAGTTTGATGGTAGCTACGGTGGAAACTCTGCAACTGCATATGGTGGCTATTGTGGATATGGTTATGGATTTGGGTATGGGGGGCCAATGTATTGCTTTGGTGGTTATGGAGTCAATTCTTATGTTAATCCTGGTGGCTATGGTGCCATTGCTACATATGGAGATGGCAATGCATATGGAAGAGTTGGTGGTTTTAATGGCACTTTTGGCTATGACAGTGGCAAAGTGGCTGAGAAGGACGAGAGTCCTGCAAATGGAAGATACCATCCTTATTGGAAGTGA 1107 0.4146 MDYYPFQHSHSESHNGDEIVLQNHQFNPPPHNFHANHDHYIHNVNHSFNRHDSLSGKLFVGGISWETSEETFFKYFNKFGEVVDSVIMMDKHSGRPRGFGFVTFTDSAVADKVLAQEHTIDGRVVEVKRTVPRGDMEATAVFRTKKIFVGGIPQFLTDDELKEYFSPYGNIVEHQIMLDYQTGRSRGFGFVTFDSEDSVEKVVSAGIIHELGGKQVEIKRAEPKRSGVDYSSTSRKSYVGFGNEMNGFGGHNSRGHNIGRRGGPYTDSGMNGAYSQFDGSYGGNSATAYGGYCGYGYGFGYGGPMYCFGGYGVNSYVNPGGYGAIATYGDGNAYGRVGGFNGTFGYDSGKVAEKDESPANGRYHPYWK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0229 368 Gene3D - 55 136 IPR012677 -
Lan3g0229 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 132 IPR000504 GO:0003723
Lan3g0229 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 205 IPR000504 GO:0003723
Lan3g0229 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 125 IPR000504 GO:0003723
Lan3g0229 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Lan3g0229 368 CDD RRM1_hnRNPA_hnRNPD_like 58 128 - -
Lan3g0229 368 SMART rrm1_1 146 219 IPR000504 GO:0003723
Lan3g0229 368 SMART rrm1_1 57 128 IPR000504 GO:0003723
Lan3g0229 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 48 366 - -
Lan3g0229 368 SUPERFAMILY RNA-binding domain, RBD 145 279 IPR035979 GO:0003676
Lan3g0229 368 PANTHER BOULE-RELATED 48 366 IPR037366 GO:0003729
Lan3g0229 368 Gene3D - 137 284 IPR012677 -
Lan3g0229 368 SUPERFAMILY RNA-binding domain, RBD 55 136 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0229 Lan-Chr3 1497312 1500041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0229 32 224 Eukaryotic Initiation Factors Gene Family AT1G71770 30.542 4.34e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0229 K12741 - gmx:100818080 501.516