Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0224 ATGGAAGAAAAGCCTAAGCTTCTTCATGGAACAATTGAAGCTACCATTTTCAATGCCACACCTTACTCACCTTCATTTCCCTTAAATTGTATATGTGCAAATGGAAAGCCTGCTTATGTGACTATCAAGATAGGCAACAAAAAGGTGGCGAAAACAACCGAAGAATGCGAACGCGTATGGAACCAAACCTTCCAGATTCAATGTGCTCATCCAGGTGATTCAACTATCACCATTACATTGAAAACATCATGCTCCATGTTGGGTAAATTCCATATCCAGGCTCAGGAGTTGAAGGAAGGAAGTTTGATAAACGGTTTCTTCCCTCTCCTTGTGGATAACGGAAAACCAAACTCGCGACAAAAGTTAAGGTTTATATTATGGTTCAAGCCAGCTGAATTGGAACCAAGTTGGACAAAGCTACTAAGAAATGGAGAGTTTCAAGGGCTGAGGAATGCTACATTCCCACAAAGGTCGAATTGTCGGGTTAAGCTATATCATGATGCTCATCATTCATCTTCTTTTCAACCTCCTTTTGATCTTATTGGAGCTCCGAGAAATTTATGGGAGGATGTTTATATAGCCATTGAGGATGCGAAGTATTTGATTTATATTGCAGGCTGGTCCTTCAACCCCAAGATAGTTTTGGTTAGAGATCCCCAAACTGAAATCCCACATGCTAGAGAAGTAAAGTTGGGTGAATTACTGAAGAAGAAATCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATCAAAAACAAAGGCGTGATGAACACACACGACGAAGACGCATTTTCTTACTTCAAACACACCAAAGTAATATGCAGAAAGTGTCCGAGATTGCACCATAAATTCCCCACACTCTTTGCTCACCATCAGAAGACTATAACTATGGACACTAGAGTACACAATTCTGTTAATGAAAGAGAAATTATGAGTTTTCTTGGTGGTGTAGATTTGTGTGATGGAAGGTATGATACAGAGAAACATTCACTATTTCATACACTTGATAAGGAATCACGTTCCGATTTCTACCAGACGAACATCGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTTCTGACTAATTTTGAGCAAAGATGGACAAAACAATTTGATCCTTCCGTTCTAGTCCCAGAAAACACCTTAGTAAATCTTGTTCCTAGGACTAGCTCAAGCACTCTCTCAGAAAGGGATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGCAAGCCAATTGTTTAGAAAGCTAACTGTGGAGAGAAGCATTCATGAAGCTTATGTTGAAGCAATTAGGCGCGCCGATAGGTTTATATATATCGAGAACCAATATTTCATTGGAGGGTGTCATTTGTGGGAGAAAGATAAGTATAGTGGCTGCACAAATCTTATTCCTATTGAGATTGCACTCAAGGTGGTAAGCAAGATTAAAGCGAAAGAGAGGTTTGCAGTGTACATAGTAATGCCGATGTGGCCAGAAGGAGTGCCCGAAAGTGAACCAGTTCAAGATATACTGCATTGGACTAGAGAAACAATGAAAATGATGTATAGGTTGATTGGAGAAGCCTTACAAGAAAGTGGAGAACAAGGGCACCCTAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGAGAACATAAGAAGGAAGGGGAGTATCTTCCTCCACATTCTCCTCATCATGAAACACAATACTGGAATGCACAAAAACATAGGAGGTTCATGGTTTATGTTCATTCCAAGCTCATGATAGTGGATGATATATACATATTAATAGGATCAGCCAATGTGAACCAAAGATCAATGGATGGACAAAGGGACACTGAGATTGCAATAGGGTGCTACCAATGTAAAGATTATGGAGCTGATAACCAAATTGAACATGGTGATATTCATGCATATAGAATGTCACTATGGTATGAACACACTGCTAGTGCTGATGGATTGTTCTTAGAGCCAGAAAGTGCAGAATGTGTGCAGAGAATGAGGTCCATAGGAGATAAAATGTGGAAAATATACAATGGTGAAGAAAATGTGGACATGGAAGGTGTGCACCTTGTGACATACCCTATGAAGGTAACACAAGAAGGGTGTGTAGAGGATCTAAGTAATGGAGGGGAACATTTTCCTGATACAAAGTCTCTAGTGAAGGGAAAGAGAGCTAAATTGTTACCACCTATCTTTACCACTTAG 2277 0.404 MEEKPKLLHGTIEATIFNATPYSPSFPLNCICANGKPAYVTIKIGNKKVAKTTEECERVWNQTFQIQCAHPGDSTITITLKTSCSMLGKFHIQAQELKEGSLINGFFPLLVDNGKPNSRQKLRFILWFKPAELEPSWTKLLRNGEFQGLRNATFPQRSNCRVKLYHDAHHSSSFQPPFDLIGAPRNLWEDVYIAIEDAKYLIYIAGWSFNPKIVLVRDPQTEIPHAREVKLGELLKKKSEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFSYFKHTKVICRKCPRLHHKFPTLFAHHQKTITMDTRVHNSVNEREIMSFLGGVDLCDGRYDTEKHSLFHTLDKESRSDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQFDPSVLVPENTLVNLVPRTSSSTLSERDWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFIYIENQYFIGGCHLWEKDKYSGCTNLIPIEIALKVVSKIKAKERFAVYIVMPMWPEGVPESEPVQDILHWTRETMKMMYRLIGEALQESGEQGHPRDYLNFFCLANREHKKEGEYLPPHSPHHETQYWNAQKHRRFMVYVHSKLMIVDDIYILIGSANVNQRSMDGQRDTEIAIGCYQCKDYGADNQIEHGDIHAYRMSLWYEHTASADGLFLEPESAECVQRMRSIGDKMWKIYNGEENVDMEGVHLVTYPMKVTQEGCVEDLSNGGEHFPDTKSLVKGKRAKLLPPIFTT* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0224 758 SUPERFAMILY Phospholipase D/nuclease 425 683 - -
Lan3g0224 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Lan3g0224 758 SMART pld_4 602 629 IPR001736 GO:0003824
Lan3g0224 758 SMART pld_4 295 332 IPR001736 GO:0003824
Lan3g0224 758 PIRSF PLD_plant 2 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lan3g0224 758 Pfam C2 domain 38 109 IPR000008 -
Lan3g0224 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 117 IPR035892 -
Lan3g0224 758 PANTHER PHOSPHOLIPASE D ALPHA 4 758 - -
Lan3g0224 758 PANTHER PHOSPHOLIPASE D 4 758 IPR015679 -
Lan3g0224 758 Gene3D Endonuclease Chain A 173 413 - -
Lan3g0224 758 Gene3D Endonuclease Chain A 414 647 - -
Lan3g0224 758 Pfam Phospholipase D C terminal 677 747 IPR024632 -
Lan3g0224 758 SUPERFAMILY Phospholipase D/nuclease 143 402 - -
Lan3g0224 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 629 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0224 Lan-Chr3 1442864 1446378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0224 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 64.777 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0224 K01115 - gmx:100807431 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0224 3 1442864 1446378 Lan9g0639 9 9422024 9426372 PCT
Lan9g0639 9 9422024 9426372 Lan3g0224 3 1442864 1446378 PCT