Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0214 ATGCAGAAAGGATCACTTTGTCATTCAGCTTGTAATAGATCTCTTTTAGCTTCACTTCATCAGAAGTTGTTATCAACTTCAATGGATGGTATGAGTTGGGATGCTTCACAACTTGTTTCTAACATTCCAATCTTGTGGAGCACTAATGAGCAGCATCAAGACCTAGAAGGAGGAGGGTACTACATGCCGAATCCAATTAGTTCAAGTGGTGTAAATCAAATGCAAGAGATTCACAAGGCTGAAACAGAACCTGGTACCACTACTGATGAGATAATAATGAGTATCATGATGCCAAACACAAATCTGTCACAAAAAATAGCAACAACAGCTGGAGCCAGTTTGGAATTAGAAGCTTTCACATATAAATCATGCTACCAGTCCCTTTCAGTCAATATGATGAACAACTATGTGCCAGATTTCAGCATAGCCCACAAACAACAACTTCAAATCAATAATGGCACACTACAAAAGACCAATGTTAACAACATTCTTAATCAGTCACTTGATCATTGCTTGCTTTCCACTACTAATAGTATGATCAGCACAGATGACAAGTCTGTAGAAAATGGTGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACAATAACTTCAGTTATGGCAACAGTACTACAATTTCCTCTATTGAATCTGAGAGTAATGCTTCCAATACTAGAGACAAAAACATGCAGCAGTATCATCATGTCAATGAACTTGATGAAACACTATCTCAAAGCTCCTCAGATCATTATGTAAGTCCAGCAAAAATCATATACTCTTCTAAGGTTAGTAATTGCACAACAAAAAGGAGTAATGATGATATTCAGTATGATCCATACTTCAATATTCTTCAGAATTCTTCTGCTAATAATATTGAAGGTGGTGGTTTCAAGCTTATCTCAGAGAATGCAACAAAATCCAAGAAACCAAGATGGGATCATAAGCATCCTTGTTCATCTACTATAAGTTTCCAGCAGCCAAACTCATCATCAGTGTCATCATTCAATGAAGAACCTGATCAAGAGGCAATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTTAGGCCAGTGAATTTGGGCTTGGAGGTTGTGGAAAAGCCTAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACAGTTTCTGCAAGGCAAAGAAGGGAGAGGATAAGTGAGAGGATTAGGGCTTTGCAGAATATTGTGCCAGGTGGAAGCAAAATGGACACTGCTTCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGGTCACAAGTGAAAGCACTAGAGAGTCTAGGAAACAAAGTTGATGCAATGAATAATTACCCTCCTTCCAGTTTTGCATTCTCTTTCAACCCTACTTTCCCCATGCAAACTCAATTCCACATCCATAACCCTAGCCACAATATTCAACATTCCCTGGGATGA 1449 0.3837 MQKGSLCHSACNRSLLASLHQKLLSTSMDGMSWDASQLVSNIPILWSTNEQHQDLEGGGYYMPNPISSSGVNQMQEIHKAETEPGTTTDEIIMSIMMPNTNLSQKIATTAGASLELEAFTYKSCYQSLSVNMMNNYVPDFSIAHKQQLQINNGTLQKTNVNNILNQSLDHCLLSTTNSMISTDDKSVENGDGISMILSDCRNLWNNNFSYGNSTTISSIESESNASNTRDKNMQQYHHVNELDETLSQSSSDHYVSPAKIIYSSKVSNCTTKRSNDDIQYDPYFNILQNSSANNIEGGGFKLISENATKSKKPRWDHKHPCSSTISFQQPNSSSVSSFNEEPDQEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISSDPQTVSARQRRERISERIRALQNIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNNYPPSSFAFSFNPTFPMQTQFHIHNPSHNIQHSLG* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0214 482 Coils Coil 419 439 - -
Lan3g0214 482 Pfam Helix-loop-helix DNA-binding domain 390 429 IPR011598 GO:0046983
Lan3g0214 482 PANTHER TRANSCRIPTION FACTOR BHLH87 37 479 - -
Lan3g0214 482 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 479 IPR045843 GO:0003700|GO:0006355
Lan3g0214 482 SMART finulus 386 435 IPR011598 GO:0046983
Lan3g0214 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 429 IPR011598 GO:0046983
Lan3g0214 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 386 445 IPR036638 GO:0046983
Lan3g0214 482 MobiDBLite consensus disorder prediction 311 341 - -
Lan3g0214 482 MobiDBLite consensus disorder prediction 321 341 - -
Lan3g0214 482 Gene3D - 385 449 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0214 Lan-Chr3 1371066 1372792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0214 125 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.787 1.99e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0214 HLH 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0214 - - lang:109358246 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2123 6 31741451 31744125 Lan3g0214 3 1371066 1372792 LSH
Lan10g0275 10 1770452 1772805 Lan3g0214 3 1371066 1372792 LSH