Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0208 ATGGATGAGAGGTCAATAAATGAGGTTTCTCCTCAGCTTTTGGATTTGATCTCAAATGAGAAAGAATGGAACATAAAAAAAAGTGAAGGAAAGTGTTCTGAGGAGAAGGAACTTGAACTCAAACTTGGTCCACCTGGTTGTGAAGATAATATGAAAAACAACATCAACAACACTAGTACTATTGAAAGAGATCACTCTCTACTTTCTCTTGGTTACTTTCCCAATAATGGTTTTCAAAAACAGAATCTTTCTACTTCTGATATTCCATCCAAGGCTATTTATCCTTCTCCATGGTCTTCTTCAACAAGTTACCACCACCAACATCAATATAAGGGTAATAATAAAGCTTTATCATTTCTTGTGATGGGAAATGATGCATCCCCTAAGGTTGGTGCTACTGAGAAGAAAGTGCTCTCTCCCTCTTCTGCAAACACAGCTGTTTCCAACAACACTTCTCAGAAAAGAAATGCTCCTGGTTCTGTAGTAGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACCTTGCAAACAGCAGCACTTCTAAGCCATCACATGGTTCCTCTCAGCAGCAGAAACAACATGACAAGGTTGTTGGTAAGAAACATGTTGATAACTATGTTGTTGGTGGTAGTAAAAGTTTGTTCGTGAAGATCAATATGGATGGTGTTCCTATTGGGAGAAAAGTGGACCTCAATGCTTACTATAGCTATGAAAATCTATCCTCTGTTGTGGATGAACTTTTTAGAGACCTTCTTGCAGCTCAAAGAGATTCCTCTGGTGTTAGAGTTCACAACAAGAAAGAGGAAGAGAAACCTATTACAGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCATATGTTCCTATCAACAGTAAAGAGGCTAAGGGTGTTGAAGAGTACTGAACTTTCTGCTTTTACACTGGGTAGTAAACAAGAGAAGATACCAATTGACTCAGCAATGAAATGA 1017 0.3904 MDERSINEVSPQLLDLISNEKEWNIKKSEGKCSEEKELELKLGPPGCEDNMKNNINNTSTIERDHSLLSLGYFPNNGFQKQNLSTSDIPSKAIYPSPWSSSTSYHHQHQYKGNNKALSFLVMGNDASPKVGATEKKVLSPSSANTAVSNNTSQKRNAPGSVVGWPPIRSFRKNLANSSTSKPSHGSSQQQKQHDKVVGKKHVDNYVVGGSKSLFVKINMDGVPIGRKVDLNAYYSYENLSSVVDELFRDLLAAQRDSSGVRVHNKKEEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFLSTVKRLRVLKSTELSAFTLGSKQEKIPIDSAMK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0208 338 MobiDBLite consensus disorder prediction 131 198 - -
Lan3g0208 338 ProSiteProfiles PB1 domain profile. 212 316 IPR000270 GO:0005515
Lan3g0208 338 Pfam AUX/IAA family 37 320 IPR033389 -
Lan3g0208 338 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 329 IPR003311 GO:0005634|GO:0006355
Lan3g0208 338 Gene3D - 207 327 - -
Lan3g0208 338 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 329 - -
Lan3g0208 338 MobiDBLite consensus disorder prediction 137 158 - -
Lan3g0208 338 MobiDBLite consensus disorder prediction 171 192 - -
Lan3g0208 338 SUPERFAMILY CAD & PB1 domains 210 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0208 Lan-Chr3 1340501 1344184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0208 216 327 B3 DNA Binding Superfamily AT4G23980 33.929 1.27e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan3g0208 AUX_IAA 3.8e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0208 K14484 - gmx:100804593 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2120 6 31716232 31719955 Lan3g0208 3 1340501 1344184 LSH
Lan10g0272 10 1744920 1748730 Lan3g0208 3 1340501 1344184 LSH