Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0180 ATGAGCGTGGTTGGTTTTGATTTTGGGAATGAGAGCTGCATTGTTGCAGTTGCGAGGCAGAGGGGGATTGATGTTGTGCTTAATGATGAGTCGAAGCGTGAAACTCCTGCAGTTGTATGCTTCGGTGACAAACAAAGGTTCATTGGAACAGCTGGAGCTGCTTCTACTATGATGAACCCGAAGAATTCGATCTCACAGATGAAGCGTTTGGTTGGAAAGAAATTTTCTGACCCTGAGTTGCAGAAGGATCTGAGGTCACTGCCTTTTGTTGTTACTGAAGGGCCTGATGGATACCCATTAATTCATTCACGGTACTTAGGTGAAGCTAAGACATTCTCACCAACCCAAGTACTTGGAATGATGTTTTCGAACCTTAAAGAAATTGCCGAGAAAAATCTGAATGCAGCCGTTGTTGATTGTTGCGTTGGAATTCCAGTTTATTTTACTGATCTTCAGAGGAGGGCAGTCTTGGATGCAGCTACTATTGCAGGATTGCATCCACTTCACCTCCTTCATGAAACAACAGCAACTGCCTTGGCTTATGGAATTTATAAAACCGATCTTCCTGAAAATGATCAGCTGAATGTAGCCTTTGTTGACATTGGACACGCTAGCATGCAAGTATGCATTGCCGGGTTTAAAAAGGGGCAGCTAAAAGTGTTGGCTCATTCATATGATAGGTCTCTCGGTGGTAGGGATTTTGACGAGGTTCTATTCCACCACTTCGCTGCAAAATTTAAGGAGGAGTACAAGATTGATGTCTTCCAGAATGCCAGGGCTTGTCTAAGGTTGAGGGCTGCTTGTGAGAAGCTGAAGAAAGTGCTTAGTGCAAATCCTGAGGCACCTCTGAATATTGAGTGCCTGATGGATGAGAAGGACGTTAGGGGTTTTATCAAGCGTGACGAGTTTGAGCAACTAAGTTTGCCAATTTTGGAACGAGTGAAGGAACCATTGGAAAAGGCACTTGCAGAAGCAGGTCTTACTGTTGAGAATGTACACATGGTTGAGGTGGTTGGTTCTGGTTCTCGTGTACTAGCTATAAACAAAATATTGACGGAGTTTTTCAAAAAAGAGCCTAGGCGGACAATGAATGCTAGTGAATGTGTTGCTAGGGGTTGTGCATTGCAGTGTGCTATTCTCAGTCCAACATTTAAAGTTCGAGAGTTTCAGGTCAATGAAAGCTTTCCATTCTCAGTTTCTCTTTCCTGGAAAGGTTCTGGTCCAGATGCACAGGAAAGTGAAGCAGATACTAAGCAAAGTGCCGTTGTTTTCCCTAAGGGAAATCCCATACCTAGTGTCAAGGCATTGACATTTTACAGGCCAGGAACCTTTTCTGTTGATGTACAATATGATGATGTGAGTGGGTTGCAAGCATATGCACCTATCAGCACATATACTATTGGCCCTTTCCAATCCGCCAAAAGTGAAAAGGCAAAAATTAAAGTGAAAGTTCGTTTGAATCTACATGGGATTGTATCTGTTGAGTCAGCAACCCTCCTAGAAGAGGAAGAAATCGAGGTTCCAGTTTCGAAAGAACCAGCAGGAGAAAACACCAAGATGGAAACTGATGATGCCGCTGCTGATGCCCCTGTGGCTGAAAATGGCCTTCCTGAGACAGGAGATAAGCCTGTGCAAATGGATGTTGATACAAAGGTTGAGGCTTCAAAGAAAAAGGTAAAGAAAACAAACATTTCCGTTGCAGAGCTAGTTTATGGTGCAATGTTGCCCGTGGATGTCCAGAAAGCTGTAGAGAAGGAATTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAAGACAAAAAGAATGAAGTTGAGGCTTATGTTTATGACATGAGAAACAAACTTAATGACAAATACCAAGAGTTTGTCATTGCTCAAGAGAGGGAGGAGTTTATTGCTAAACTTCAGGAGGTGGAAGACTGGCTATATGAGGACGGTGAAGATGAAACCAAAGGGGTTTATGTTGCCAAACTCGAAGAGCTCGAGAAGCAAGGTGATCCAATTGAAGAGCGTTACAAGGAATACGAGGAGAGGGGTGCAGTAATTGATGAACTTATCTATTGTATAAATGGTTACAGAGAAACTGTAATCTCAAATAATCCCAAATTTGATCACATCGACATTAGCGAGAAAGAGAAGGTCTTGAATGAATGCCTAGAGGCTGAGAATTGGGTTAGGGAGAAGAAGCAACAGCAGGACTCACTTCCAAAATATGCCACTCCTGTACTCTTATCAGCTGATATAAGAAAGAAAGCTGAAGCTGTTGATAGGTTCTGTAAGCCAATTGTGACTAAACCAAAACCAAAGCCAGCCAAGGTGGCAACTCCAGAAACACCCCCAACTCCACCACCTGAGGGTAATGAGCATCAGCAACCTCAACAAAATGGCAATGGCAGCGCTAATGAGAATGCAGGGGACAGTGGAAATCAGGCCCCACCAGAGTCTAGTGAACCAATGGAGACTGATAATAAGACAGAGCACACTGGCTCAGCATAA 2502 0.4337 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFIGTAGAASTMMNPKNSISQMKRLVGKKFSDPELQKDLRSLPFVVTEGPDGYPLIHSRYLGEAKTFSPTQVLGMMFSNLKEIAEKNLNAAVVDCCVGIPVYFTDLQRRAVLDAATIAGLHPLHLLHETTATALAYGIYKTDLPENDQLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSYDRSLGGRDFDEVLFHHFAAKFKEEYKIDVFQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKEPLEKALAEAGLTVENVHMVEVVGSGSRVLAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSVSLSWKGSGPDAQESEADTKQSAVVFPKGNPIPSVKALTFYRPGTFSVDVQYDDVSGLQAYAPISTYTIGPFQSAKSEKAKIKVKVRLNLHGIVSVESATLLEEEEIEVPVSKEPAGENTKMETDDAAADAPVAENGLPETGDKPVQMDVDTKVEASKKKVKKTNISVAELVYGAMLPVDVQKAVEKEFEMALQDRVMEETKDKKNEVEAYVYDMRNKLNDKYQEFVIAQEREEFIAKLQEVEDWLYEDGEDETKGVYVAKLEELEKQGDPIEERYKEYEERGAVIDELIYCINGYRETVISNNPKFDHIDISEKEKVLNECLEAENWVREKKQQQDSLPKYATPVLLSADIRKKAEAVDRFCKPIVTKPKPKPAKVATPETPPTPPPEGNEHQQPQQNGNGSANENAGDSGNQAPPESSEPMETDNKTEHTGSA* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0180 833 MobiDBLite consensus disorder prediction 505 525 - -
Lan3g0180 833 MobiDBLite consensus disorder prediction 774 789 - -
Lan3g0180 833 Gene3D Actin; Chain A, domain 4 230 313 - -
Lan3g0180 833 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lan3g0180 833 CDD HSPA4_like_NDB 2 381 - -
Lan3g0180 833 Gene3D - 576 684 IPR029048 -
Lan3g0180 833 MobiDBLite consensus disorder prediction 765 833 - -
Lan3g0180 833 MobiDBLite consensus disorder prediction 505 523 - -
Lan3g0180 833 PANTHER HSC70CB, ISOFORM G-RELATED 1 826 - -
Lan3g0180 833 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 826 - -
Lan3g0180 833 Coils Coil 660 680 - -
Lan3g0180 833 MobiDBLite consensus disorder prediction 790 820 - -
Lan3g0180 833 Gene3D - 38 113 - -
Lan3g0180 833 Pfam Hsp70 protein 3 675 IPR013126 GO:0005524|GO:0140662
Lan3g0180 833 Gene3D - 186 360 - -
Lan3g0180 833 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 607 IPR029047 -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 2 15 - -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 30 42 - -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 140 160 - -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 332 348 - -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 363 383 - -
Lan3g0180 833 PRINTS 70kDa heat shock protein signature 477 493 - -
Lan3g0180 833 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 577 674 IPR029048 -
Lan3g0180 833 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 691 772 IPR029048 -
Lan3g0180 833 Gene3D - 5 374 - -
Lan3g0180 833 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lan3g0180 833 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 571 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0180 Lan-Chr3 1158062 1163553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0180 4 438 Calmodulin-binding Proteins AT1G16030 35.160 9.48e-85 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0180 K09489 - gmx:100813658 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0241 10 1525234 1530652 Lan3g0180 3 1158062 1163553 LSH
Lan3g0180 3 1158062 1163553 Lan5g0568 5 11347295 11352848 PCT
Lan3g0180 3 1158062 1163553 Lan9g0688 9 10052724 10062652 PCT
Lan3g0180 3 1158062 1163553 Lan2g0444 2 4821993 4827666 PCT
Lan5g0568 5 11347295 11352848 Lan3g0180 3 1158062 1163553 PCT
Lan9g0688 9 10052724 10062652 Lan3g0180 3 1158062 1163553 PCT
Lan2g0444 2 4821993 4827666 Lan3g0180 3 1158062 1163553 PCT