Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0177 ATGGATGATATTGAAGATGATGACACAATGTATCCCCCGAACCCATATAGGGTTAGTCATCTTCACCAAGGTTATGAATATATGAGTCGCCGGAAACCTACTTCGAGGGTTTCTCCATTTAATGAGCTAGTAGGAAATGAATATGGAGAAGATAATAATAATAGTAATGAGGGTGAGGAAGAGGTACAGGAAGAGGAAGAGCGATTAGGAGAGGAAGAAGACGATGAGGATGATATTGATCAAGCTAACAACATTCAGCCTTCTGACAAGGATATCGATGACAATGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGATGCGAATGGGGGTGGTGATGAAAATTGTGATGATAGTGATGATGGTGAGGATGATGATGACTACGACGATGATGATAAGCATAAAAGTTATATAGTGGAGATTGATAATGATGTAGAGTGCCAACCAAAGAAACAAAAGCTCAAGAGTTTGATTTCAACGTATGAACTTGCGCCCCATGTGCCAGCACCATCAGCCGCAGCTCCCTCAGTTTCTAAACCATATTTTGGTAGGAATTCCGTTAATGACTGGACTGAGCATGAGACACTCGTTCTTCTTGATGTATGGGCTGATTGGTTTCTTCAATGTGGAAGTAAGAGTCTTCAATTAGAGGAATGGCAAGAAGTTGCAGAAAAGGTATCAAAAGTTTCAAAAATTGAAAGGACAGGTACGCAGTGTAGACACCATCTAAATACATTGAAGAAAAAATACGAAAAGGAGAAAGTTAAATTTCGAGAAATGGATGATGGAGCTAGCAAATGGGTTTATTTTAAAAGGATGGATGAGCTAATGTCTTCTTCACCACAACAAGCAGGTCTCTGTTGTGGTTTGAATTCCGGTGAGTATGTTCCTGCAAACGCTAGAATTTATTCAAATCGGACAAATGGATTGGATGAAACAAGGAGTAGTCCTCGGAGTACAAAACCTATCGCTGAAGAAGGTTCAGATAGGCCTCATGCAAAGAGAGGAAGAAAGGGAAGGGGCAGTGGTGAAGCTTCTTCCTTCAGATTACTTGCTGATTCCCTTCATAAATTCAGTAACGTGTATGAGAAGATAGAAAATGATAGAAGGCAACAGATGGTGGAATTGGAAAAGATGAGAATGGATTTCCAGAAGGAAATAGAAACAGAGAGGCGACAGATTTTAGAAAGACTGCAGAGCGAGATTTCGAAACTAGAGCAGATAGATGATGAGAATGATGGTTCTTCTGAGAATGGTTAG 1260 0.4063 MDDIEDDDTMYPPNPYRVSHLHQGYEYMSRRKPTSRVSPFNELVGNEYGEDNNNSNEGEEEVQEEEERLGEEEDDEDDIDQANNIQPSDKDIDDNEEEEEEEEEEDDANGGGDENCDDSDDGEDDDDYDDDDKHKSYIVEIDNDVECQPKKQKLKSLISTYELAPHVPAPSAAAPSVSKPYFGRNSVNDWTEHETLVLLDVWADWFLQCGSKSLQLEEWQEVAEKVSKVSKIERTGTQCRHHLNTLKKKYEKEKVKFREMDDGASKWVYFKRMDELMSSSPQQAGLCCGLNSGEYVPANARIYSNRTNGLDETRSSPRSTKPIAEEGSDRPHAKRGRKGRGSGEASSFRLLADSLHKFSNVYEKIENDRRQQMVELEKMRMDFQKEIETERRQILERLQSEISKLEQIDDENDGSSENG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0177 419 MobiDBLite consensus disorder prediction 53 82 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 34 52 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 323 342 - -
Lan3g0177 419 Coils Coil 55 82 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 306 322 - -
Lan3g0177 419 Gene3D - 190 252 - -
Lan3g0177 419 ProSiteProfiles Myb-like domain profile. 190 247 IPR001005 -
Lan3g0177 419 PANTHER OS01G0718900 PROTEIN 86 418 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 91 130 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 306 346 - -
Lan3g0177 419 MobiDBLite consensus disorder prediction 27 132 - -
Lan3g0177 419 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 86 418 IPR044823 -
Lan3g0177 419 Coils Coil 362 393 - -
Lan3g0177 419 Pfam Myb/SANT-like DNA-binding domain 188 276 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0177 Lan-Chr3 1148908 1150882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0177 341 418 Trihelix Transcription Factor Family AT3G14180 39.744 8.84e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan3g0177 Myb_DNA-bind_4 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0177 - - lang:109342851 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2090 6 31506617 31508558 Lan3g0177 3 1148908 1150882 LSH
Lan10g0238 10 1517071 1519024 Lan3g0177 3 1148908 1150882 LSH