Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0168 ATGGCCACAGAATTAGGTCTTGGACTTGAAATCACGGAGCTAAGGTTAGGTCTTCCCGGTGGGGAACCTATGTGTGTTGATAATAAGAATGAAAAGAAGAGGGTGTTCTATGAGATTGAAGGTGGTGGCGATGAAAACAGCTCCTCCGGTGACCGGAACATGCCGAAAAAGATTCAAGTAGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAATAGCATGAATGAAGCTTCAAAACCTTATGTGAAGGTTAGCATGGATGGTGCACCATTCTTGCGTAAAATTGATTTAGGTATGCATAAGGGTTATTCAGAGTTAGCTTTGGCCTTGGAGAAGCTATTTGGTTGCTATGGAATTGGTGAGGCATTGAAGGATGTTGATAATTGTGAAGAGGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGACCCTTGGGAGATGTTTATTGAGTCATGCAAGAGACTGAGGATTATGAAGAGATCAGATGCAAAGCGATTCGGTTTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGACGTGACAAAGTGA 570 0.4351 MATELGLGLEITELRLGLPGGEPMCVDNKNEKKRVFYEIEGGGDENSSSGDRNMPKKIQVVGWPPVCSYRKKNSMNEASKPYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCYGIGEALKDVDNCEEVPIYEDKDGDWMLVGDDPWEMFIESCKRLRIMKRSDAKRFGLQPKGSLKGFIEDVTK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0168 189 Pfam AUX/IAA family 51 170 IPR033389 -
Lan3g0168 189 Gene3D - 74 177 - -
Lan3g0168 189 SUPERFAMILY CAD & PB1 domains 73 165 - -
Lan3g0168 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Lan3g0168 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 6 171 - -
Lan3g0168 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0168 Lan-Chr3 1088019 1089835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0168 38 187 B3 DNA Binding Superfamily AT4G23980 30.667 1.34e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan3g0168 AUX_IAA 9.8e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0168 K14484 - gmx:100791342 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2081 6 31426600 31430566 Lan3g0168 3 1088019 1089835 LSH