LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g0164	ATGAGTGGAGGAGCTTTAACAGGATTACAAGATCATCTCAAATTAGCAAGAGAATACGCTCTCGAAGGACTCTACGACACTTCAATCATCTTCTTCGATGGCGCAATTGCACAGATCAACAAGCACCTAAATAGTGTTGATGATCCTTTAATCCGTTCCAAATGGATGAATGTGAAAAAAGCGCTTTCTGAAGAAACTGAGGTTGTGAAGCAACTAGATGCAGAGATAAGGGTATTTAAGGAAACTCCTATGGGAAATTCAAGACGTGCTCCTTCACCACCGATATCAGTTTCTTCTGGCAAATCTAACTTTGCATTTCAGCCGTTGGACGAGTATCCTACTTCGTCATCATCGGGAGGTGGTGGTGGTGGTGGTTTTAATAATCCGATGGACGATCCTGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCTGCAAGGAATGTGAAGAAAGATGGTGCGTGGGCGCGTGGTGCTACTACCAGAACATCAGCAACGGGTGCTGCTGCGACAAATGCTCGTGCTGGTGGTGGTGGGAGGGCGGGTAGGGTTAACTCTGGAACGCGAGGATCGACTTCTGCGAAGAAAGGGAATGCTTCTGGAAGATCTAGTAAGACAGATTCATCTAATGGGGATGTTGATGATGGGAAATCAAAGAGAGCACAATATGAAGGTCCTGATCCTGACTTGGCTGAAATGCTTGAAAGAGATGTATTGGAAACCTCTCCCGGAGTCAGGTGGGATGATGTTGCTGGCCTCACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACATTAGCTTCTAAGTGGCGTGGCGAGAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGATCGTATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCCGGGGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTTTTGGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCATGGGACATTGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCACCGACGTCAACATAGATGATGTGGCTCGCAGAACAGACGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGACGAGATCAAGAACATGCCCAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAAAGAAGTGTTTCTCAGGCTGACATTGATCGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA	1611	0.4513	MSGGALTGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAEIRVFKETPMGNSRRAPSPPISVSSGKSNFAFQPLDEYPTSSSSGGGGGGGFNNPMDDPDVWRPPSRDTSRRPQAARNVKKDGAWARGATTRTSATGAAATNARAGGGGRAGRVNSGTRGSTSAKKGNASGRSSKTDSSNGDVDDGKSKRAQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARSYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNIDDVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA*	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g0164	536	CDD	AAA	282	425	-	-
	Lan3g0164	536	MobiDBLite	consensus disorder prediction	83	234	-	-
	Lan3g0164	536	SMART	AAA_5	284	427	IPR003593	-
	Lan3g0164	536	Pfam	ATPase family associated with various cellular activities (AAA)	288	425	IPR003959	GO:0005524\|GO:0016887
	Lan3g0164	536	Gene3D	-	426	512	-	-
	Lan3g0164	536	MobiDBLite	consensus disorder prediction	89	123	-	-
	Lan3g0164	536	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	248	533	IPR027417	-
	Lan3g0164	536	ProSitePatterns	AAA-protein family signature.	397	416	IPR003960	GO:0005524\|GO:0016887
	Lan3g0164	536	Gene3D	-	4	80	-	-
	Lan3g0164	536	MobiDBLite	consensus disorder prediction	212	234	-	-
	Lan3g0164	536	Gene3D	-	246	526	IPR027417	-
	Lan3g0164	536	PANTHER	AAA DOMAIN-CONTAINING	5	536	-	-
	Lan3g0164	536	PANTHER	KATANIN P60 ATPASE-CONTAINING SUBUNIT A1	5	536	-	-
	Lan3g0164	536	Pfam	AAA+ lid domain	447	488	IPR041569	-
	Lan3g0164	536	Hamap	Meiotic spindle formation protein mei-1 [mei-1].	7	536	IPR028596	GO:0008017\|GO:0008568\|GO:0051013
	Lan3g0164	536	MobiDBLite	consensus disorder prediction	189	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g0164	Lan-Chr3	1056462	1060149	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan3g0164	240	528	Calmodulin-binding Proteins	AT3G56690	39.661	4.32e-50	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g0164	K07767		-	zju:112489859	858.596

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan6g2080	6	31419598	31423479	Lan3g0164	3	1056462	1060149	LSH
	Lan10g0174	10	1119581	1122120	Lan3g0164	3	1056462	1060149	LSH
	Lan10g0225	10	1424706	1428587	Lan3g0164	3	1056462	1060149	LSH
	Lan3g0164	3	1056462	1060149	Lan8g1607	8	23038369	23043003	PCT
	Lan3g0164	3	1056462	1060149	Lan13g0427	13	3069563	3074973	PCT
	Lan8g1607	8	23038369	23043003	Lan3g0164	3	1056462	1060149	PCT
	Lan13g0427	13	3069563	3074973	Lan3g0164	3	1056462	1060149	PCT