Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0164 ATGAGTGGAGGAGCTTTAACAGGATTACAAGATCATCTCAAATTAGCAAGAGAATACGCTCTCGAAGGACTCTACGACACTTCAATCATCTTCTTCGATGGCGCAATTGCACAGATCAACAAGCACCTAAATAGTGTTGATGATCCTTTAATCCGTTCCAAATGGATGAATGTGAAAAAAGCGCTTTCTGAAGAAACTGAGGTTGTGAAGCAACTAGATGCAGAGATAAGGGTATTTAAGGAAACTCCTATGGGAAATTCAAGACGTGCTCCTTCACCACCGATATCAGTTTCTTCTGGCAAATCTAACTTTGCATTTCAGCCGTTGGACGAGTATCCTACTTCGTCATCATCGGGAGGTGGTGGTGGTGGTGGTTTTAATAATCCGATGGACGATCCTGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCTGCAAGGAATGTGAAGAAAGATGGTGCGTGGGCGCGTGGTGCTACTACCAGAACATCAGCAACGGGTGCTGCTGCGACAAATGCTCGTGCTGGTGGTGGTGGGAGGGCGGGTAGGGTTAACTCTGGAACGCGAGGATCGACTTCTGCGAAGAAAGGGAATGCTTCTGGAAGATCTAGTAAGACAGATTCATCTAATGGGGATGTTGATGATGGGAAATCAAAGAGAGCACAATATGAAGGTCCTGATCCTGACTTGGCTGAAATGCTTGAAAGAGATGTATTGGAAACCTCTCCCGGAGTCAGGTGGGATGATGTTGCTGGCCTCACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACATTAGCTTCTAAGTGGCGTGGCGAGAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGATCGTATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCCGGGGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTTTTGGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCATGGGACATTGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCACCGACGTCAACATAGATGATGTGGCTCGCAGAACAGACGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGACGAGATCAAGAACATGCCCAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAAAGAAGTGTTTCTCAGGCTGACATTGATCGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA 1611 0.4513 MSGGALTGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAEIRVFKETPMGNSRRAPSPPISVSSGKSNFAFQPLDEYPTSSSSGGGGGGGFNNPMDDPDVWRPPSRDTSRRPQAARNVKKDGAWARGATTRTSATGAAATNARAGGGGRAGRVNSGTRGSTSAKKGNASGRSSKTDSSNGDVDDGKSKRAQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARSYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNIDDVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA* 537
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0164 536 CDD AAA 282 425 - -
Lan3g0164 536 MobiDBLite consensus disorder prediction 83 234 - -
Lan3g0164 536 SMART AAA_5 284 427 IPR003593 -
Lan3g0164 536 Pfam ATPase family associated with various cellular activities (AAA) 288 425 IPR003959 GO:0005524|GO:0016887
Lan3g0164 536 Gene3D - 426 512 - -
Lan3g0164 536 MobiDBLite consensus disorder prediction 89 123 - -
Lan3g0164 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 533 IPR027417 -
Lan3g0164 536 ProSitePatterns AAA-protein family signature. 397 416 IPR003960 GO:0005524|GO:0016887
Lan3g0164 536 Gene3D - 4 80 - -
Lan3g0164 536 MobiDBLite consensus disorder prediction 212 234 - -
Lan3g0164 536 Gene3D - 246 526 IPR027417 -
Lan3g0164 536 PANTHER AAA DOMAIN-CONTAINING 5 536 - -
Lan3g0164 536 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 536 - -
Lan3g0164 536 Pfam AAA+ lid domain 447 488 IPR041569 -
Lan3g0164 536 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 536 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lan3g0164 536 MobiDBLite consensus disorder prediction 189 211 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan3g0164 Lan-Chr3 1056462 1060149 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0164 240 528 Calmodulin-binding Proteins AT3G56690 39.661 4.32e-50 183
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0164 K07767 - zju:112489859 858.596
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2080 6 31419598 31423479 Lan3g0164 3 1056462 1060149 LSH
Lan10g0174 10 1119581 1122120 Lan3g0164 3 1056462 1060149 LSH
Lan10g0225 10 1424706 1428587 Lan3g0164 3 1056462 1060149 LSH
Lan3g0164 3 1056462 1060149 Lan8g1607 8 23038369 23043003 PCT
Lan3g0164 3 1056462 1060149 Lan13g0427 13 3069563 3074973 PCT
Lan8g1607 8 23038369 23043003 Lan3g0164 3 1056462 1060149 PCT
Lan13g0427 13 3069563 3074973 Lan3g0164 3 1056462 1060149 PCT