Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0129 ATGAGTAGTAGTAGTAGAAGTTGTTGTAGTTATCGCATTGCGATTCCAGGTTCTTCCACCGAAGACGAAGCGAGTGAATCTTCTTCATCATTCTCAACTTCATCGCTCAATTTCTCTTCTGGAAACCCTACAATCGAAGAAACTCGTGGCATCATGCATCTTTTCCGTCACGATCCTAATTCTTCCGTTTCATCTTCGCCTCCTCCTCCTCCTCCTCTTCCTGTTGAACGGAAACCGCTTGTGTGTGTTGTTGGAGTTCCAAATCATATGACTTATGCCGATTTCTGCCAATTCTCCGGTTCCTTTATTCATCATATCCTCGAGATGCGCATTGTTAGATTGGATGGGATGGAGGACTATTACAGTGTTTTAATACGGTTCAATGACCAAGACTCCACAGACAGCTTCTACAAGCATTATAATGGCCACCGCTTCTCATCCCTTGAGGTGGAGGTTTGTCGTGTCCTTTTCACATTAGATGTGCAGTACACTGGTTCCATTGAACATGCACAGCCATCTAATACTATTTCAACTGAACAGCCTACATGCCCTGTCTGCCTTGAGCGATTAGATCAAGACACGGGTGGAATTCTTACAACTATATGCAATCATTCTTTCCATTGTTCGTGTATTTCAAAATGGGCAGACTCTTCTTGTCCTGTATGCCGCTATTGTCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAGACAACTGAAAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGGTGTGGAAGATATAAAGAAGGGCATGCCATAATACACTGGAAAGAAACACACCATTGCTACTCCCTAGAAGTGGAGACCAAACGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACTCTCATTGTGTGCATGCAGACAATGGGTGTGGAAGCTGCAGCTGTGAAGATAATGGCATGAGCGAGGCTATACTTAGTAGTAAAGTTGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTAGTCAACTTGAAAGCCAAAAAGCACTTAATGAGAACCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGTTACTTGAGATTGAAGAGAGGGACAAAAAAGCTTTAAAACTGGCAGATAATAGAGTAGCGGGCTTGGAAGAGCAGCTTAGAGATCTAATGGCTTGTCTTGAGGGTAGTGAGAAGGTACAACAGCTGCAGGGGACAGATGAAATTAAAGATGGAACTGTCTTTGACATACCAAGAGAATCCTCATCAGCTAGTGCTTCTGAGCCAGGAAGAAAAGCTTAA 1332 0.4234 MSSSSRSCCSYRIAIPGSSTEDEASESSSSFSTSSLNFSSGNPTIEETRGIMHLFRHDPNSSVSSSPPPPPPLPVERKPLVCVVGVPNHMTYADFCQFSGSFIHHILEMRIVRLDGMEDYYSVLIRFNDQDSTDSFYKHYNGHRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNTISTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKEGHAIIHWKETHHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADNGCGSCSCEDNGMSEAILSSKVEAIVNEYNELLASQLESQKALNENLVKNEEIWKAKLLEIEERDKKALKLADNRVAGLEEQLRDLMACLEGSEKVQQLQGTDEIKDGTVFDIPRESSSASASEPGRKA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0129 443 Coils Coil 383 403 - -
Lan3g0129 443 MobiDBLite consensus disorder prediction 428 443 - -
Lan3g0129 443 ProSiteProfiles Zinc finger UBP-type profile. 217 310 IPR001607 GO:0008270
Lan3g0129 443 CDD RING-H2_BRAP2 181 224 - -
Lan3g0129 443 SUPERFAMILY RING/U-box 199 298 - -
Lan3g0129 443 Pfam BRCA1-associated protein 2 74 170 IPR011422 -
Lan3g0129 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 225 IPR013083 -
Lan3g0129 443 Pfam Zn-finger in ubiquitin-hydrolases and other protein 234 293 IPR001607 GO:0008270
Lan3g0129 443 PANTHER BRCA1-ASSOCIATED PROTEIN 19 356 - -
Lan3g0129 443 PANTHER BRCA1-ASSOCIATED PROTEIN 356 437 - -
Lan3g0129 443 MobiDBLite consensus disorder prediction 17 42 - -
Lan3g0129 443 CDD RRM_BRAP2_like 81 162 - -
Lan3g0129 443 Pfam Ring finger domain 182 223 IPR001841 -
Lan3g0129 443 ProSiteProfiles Zinc finger RING-type profile. 183 223 IPR001841 -
Lan3g0129 443 SMART Zf_UBP_1 233 282 IPR001607 GO:0008270
Lan3g0129 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 304 IPR013083 -
Lan3g0129 443 MobiDBLite consensus disorder prediction 421 443 - -
Lan3g0129 443 SMART ring_2 183 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0129 Lan-Chr3 880389 885375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0129 179 223 C3H Transcription Factor Family AT1G72220 46.809 6.63e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0129 K10632 - gmx:100794688 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0190 10 1200081 1204025 Lan3g0129 3 880389 885375 LSH