Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0123 ATGTGTGATGATAACTGGGTCAACCTAGCCATGACCGATGACTCAAAAGTCGTCGACCTCCTCCTCCTCCTCCACCATCCGCCACCACCTGCTCCCCACCTTCACCTCCACTGGACCGTGCGTCAACACCGTTCAAGGTCCGTACCTAGAACCAAAGCTGACCCCACCACCAGCACAAGAGCCAGCCCCACCACTCCACTCTCCTGGAGCGGTGCCACCTCAGCTAGCGGCGGCGCCGTTGATTGCTATGAACACTCCAGCCACCCTATCAAACACGCTGAAACCTCAAGATCTAAGATTGTTAATCCTAGTAATACAACCACTGCCAAAAAGTCAAGAAGAAAAAAGTCTTTAGCTGAACTAAAAGAGGAGGAGAATTTGTTGTTGCAAGAAAGGAAAAGTTTGAAAAATGAACTGACATCGTTGCGTCTCGTTGTCGAAAAACATAGAGCCACAAACGAAAGCCTAAAAAGAATGAAGCTTGACTTGGAGTCAAGACAGAACTCTAAATCAGCAACAACACTTAAGGTTCTCGATGATAACGAACCTGTGTCCGCATCGAACGCTTCTTCCAAACCACGAGAGATTAGAAACCAAGAATCTACATTTGTGTTCCCTGATCTAAATTTGCCTGTTGAGGATGATTTGAGCCCCAATGCCATGCATTGTATTTTTGCTACTATTGTGCTCAAAATCTCAACAACAATGGAAGTGCCATGGCAAAGTTTCTTCTCAGATATGGAAATGGAAGAGGGTTATTTCTTTGATCAATGCAACAAAAATTCAGTAGATGATCATGATTTTGTTCTTGGAAAGTTTCTTCAACAATCAGGTTTATCATTTGAGAGTGAAAGTCTCTCTCCTCCAAATAATGGTGGAAGTTGTTTATCTTTTGAGGACACTACAACTACTACTACTACAACTATATCCAACAACCATGTCAAACTTATGACCAAGAGCACTAGCTCCAACTCCATAGCATCTCAACATGTTCCAAACAAAGTTGTCACTGCCAATGCTACTTCTCCAAAATCATATGTTCTATCTTTTGATGAATCCAATGTTGTAGCAGAAGTAGAAGCTTCTAGAGAAATAGGTAATGGAAGAAAGCATCAAGGTAATAATGGTGACAAATCAAAAGGGTGTAATAATAACCAAACAGGTGCAAGGAAGAGTAGAAACTCTTCTGAGACTTTGGATCATATAATGGCTGAGAGAAAAAGGAGACAGGAATTGACTGAGAGATTTATAGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGATTGACAAGGCTTCAATACTTAGTGAAGCAATAACTTATGTGAAACAACTTCAGAAACGAGCTAAGGACCTTGAGGAACAAAGATGCTGCAAGAAGATAAGAGTAGAGTCAGTGTCATTCATCAATAAAACCAATCTCAACAATGATGAAGGTTCTGTTTCTAGTGCCAAAACAAGCTCTTATGATTGCAATGAACAAAATGTAGCAATCCCTGAAGTTATAGCAAGAGTCTTGGAAAAAGAAGTACTCATCCGCATCCATTGCATCAACCAAAATGGCTCTATGCTCAAAATATTGACCCATCTTAAAAGTTTAGATCTTTCCACAATAAGCAATAGTGCATTACCATTTGGAAGCTCTTTTCTTGACATTACCATTATTGCTCAGATGGGTGAAAAATACAAGTTAACCGTGAAGGAACTAGTGAAAAACTTGAGGCTAACTCTGTTGGGACCATAG 1743 0.4079 MCDDNWVNLAMTDDSKVVDLLLLLHHPPPPAPHLHLHWTVRQHRSRSVPRTKADPTTSTRASPTTPLSWSGATSASGGAVDCYEHSSHPIKHAETSRSKIVNPSNTTTAKKSRRKKSLAELKEEENLLLQERKSLKNELTSLRLVVEKHRATNESLKRMKLDLESRQNSKSATTLKVLDDNEPVSASNASSKPREIRNQESTFVFPDLNLPVEDDLSPNAMHCIFATIVLKISTTMEVPWQSFFSDMEMEEGYFFDQCNKNSVDDHDFVLGKFLQQSGLSFESESLSPPNNGGSCLSFEDTTTTTTTTISNNHVKLMTKSTSSNSIASQHVPNKVVTANATSPKSYVLSFDESNVVAEVEASREIGNGRKHQGNNGDKSKGCNNNQTGARKSRNSSETLDHIMAERKRRQELTERFIALSATIPGLKKIDKASILSEAITYVKQLQKRAKDLEEQRCCKKIRVESVSFINKTNLNNDEGSVSSAKTSSYDCNEQNVAIPEVIARVLEKEVLIRIHCINQNGSMLKILTHLKSLDLSTISNSALPFGSSFLDITIIAQMGEKYKLTVKELVKNLRLTLLGP* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0123 580 Coils Coil 435 455 - -
Lan3g0123 580 Pfam Helix-loop-helix DNA-binding domain 401 446 IPR011598 GO:0046983
Lan3g0123 580 PANTHER TRANSCRIPTION FACTOR NAI1 241 578 - -
Lan3g0123 580 PANTHER BHLH TRANSCRIPTION FACTOR 241 578 - -
Lan3g0123 580 MobiDBLite consensus disorder prediction 87 118 - -
Lan3g0123 580 MobiDBLite consensus disorder prediction 377 393 - -
Lan3g0123 580 Gene3D - 395 466 IPR036638 GO:0046983
Lan3g0123 580 SMART finulus 402 451 IPR011598 GO:0046983
Lan3g0123 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Lan3g0123 580 MobiDBLite consensus disorder prediction 42 73 - -
Lan3g0123 580 MobiDBLite consensus disorder prediction 365 399 - -
Lan3g0123 580 MobiDBLite consensus disorder prediction 179 198 - -
Lan3g0123 580 Coils Coil 118 166 - -
Lan3g0123 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 459 IPR036638 GO:0046983
Lan3g0123 580 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0123 Lan-Chr3 843370 854157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0123 359 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 39.474 1.84e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0123 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0123 - - lang:109342243 1079.32