Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0116 ATGGAGTTTTGGGGTACTGAGGTTAAGGTTGGTGAGGTTGTTAAGGTGGACCCAGAAGAAATTGAGGCCTATGTTCATCTTTCTCAGGCTGCTCTTGGCGAATCTAAGAAAGACAAAGCGAATGAACCTGTGGTTCTTCACTTGAAAGTTGGTGACCAGAGAATTGTGTTGGGAACACTTTCCAGGGATAAAATCCCTCAGACAACTCTTGAAGTAGTTCTCGACAAGGAGTTTGAGCTATCCCACAGTTCGAAGAGTTCTAGTGTCTTTTTCTGTGGATACAAGGCACTTATTCCCGACGAGGAAGATAGTGAAGAGGATGACTTTGATTCTGATGAGGATCTTCCATTGCCAACCGAAGAGAACGGAATTTCTGTAACAAAAGCTGAAGATGCAAAGGTTTCTGACCCTAAAAAGGCTGATGCCAAGAATGGTGTGCCAGTAAGACATGTTAAGATTGCTGATCCCAAGAAAGATGATTCTGATGACTCTGATGAGGATGCTGATTTTGGAAGTTCTGATGATGAGATGGATGATGCTGATAGTGATGAGGAAGGTGATAGCGATGATGATGAAAAGACCCCTGTTAAGAAGGTTGAACTTGGAAAAAAGAGGGCCAGTGATTCTGCTTCAAAAACTCCAGTCTCTAACAAGAAAGCTAAAAATGCCACTCCTCAAAAGACAGATGGTAAGAAAGGTGGACATACAGACACTCCTCACCCCGTGAAGAAAGCCAGTAAGACTCCCAACAGTGATGCTAAGGGTCAAACCCCGAAGTCTGCCGGACAATTTAGTTGCGAAAGTTGTAAAAAGGCTTTCAAGTCCGAAGATGGTATGCAACAACACAACAAGGCTAAACATGGTTAG 867 0.4337 MEFWGTEVKVGEVVKVDPEEIEAYVHLSQAALGESKKDKANEPVVLHLKVGDQRIVLGTLSRDKIPQTTLEVVLDKEFELSHSSKSSSVFFCGYKALIPDEEDSEEDDFDSDEDLPLPTEENGISVTKAEDAKVSDPKKADAKNGVPVRHVKIADPKKDDSDDSDEDADFGSSDDEMDDADSDEEGDSDDDEKTPVKKVELGKKRASDSASKTPVSNKKAKNATPQKTDGKKGGHTDTPHPVKKASKTPNSDAKGQTPKSAGQFSCESCKKAFKSEDGMQQHNKAKHG* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0116 288 MobiDBLite consensus disorder prediction 224 242 - -
Lan3g0116 288 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Lan3g0116 288 Gene3D Nucleoplasmin core domain 1 99 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 131 159 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 101 266 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 243 264 - -
Lan3g0116 288 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Lan3g0116 288 MobiDBLite consensus disorder prediction 191 207 - -
Lan3g0116 288 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 285 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 160 190 - -
Lan3g0116 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 288 IPR013087 -
Lan3g0116 288 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 285 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 209 223 - -
Lan3g0116 288 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0116 Lan-Chr3 807707 811695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0116 1 95 C2H2 Transcription Factor Family AT3G44750 57.895 2.44e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0116 NPL 3.2e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0116 - - lang:109358867 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2032 6 31074413 31077149 Lan3g0116 3 807707 811695 LSH
Lan10g0163 10 1065766 1068531 Lan3g0116 3 807707 811695 LSH
Lan3g0116 3 807707 811695 Lan7g0343 7 2352254 2355423 PCT
Lan3g0116 3 807707 811695 Lan8g1623 8 23199974 23202386 PCT
Lan7g0343 7 2352254 2355423 Lan3g0116 3 807707 811695 PCT
Lan8g1623 8 23199974 23202386 Lan3g0116 3 807707 811695 PCT