Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0105 ATGGCAGAGGATCGAAATGAGGAGAGTGATTACAGTTCAGAGGACGAAGGAACTGAGGATTATAGGCGTGGAGGGTACCACGCTGTTCGTATTGGAGACACTTTCAAGAATGGGTGTTATGTGGTGCAGAGTAAACTCGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGATACTCAGAAATTGCGGTATGTTGCCCTAAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAGCAGATCGCAGGGGGTGACCCAGATGATAAGAAATGTGTTGTCAAGCTATTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCACGTGTGTATGGTTTTTGAATTCCTAGGTGACAATCTTCTTACCCTTATAAAGTACAGTGATTATCGAGGGGTTCCCCTTCCCATGGTTAAAGAAATTTGTTTCCATATTTTGGCTGGTTTGGATTACTTGCATCGCGAGCTCTCTATAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTTTGTCTCCAATAGATCCATCTAAGGATCTAAGCAAGTCAGGTGTTCCCCTTGTCCTTCCAAACACCAAGGCCAAGACACTGCCCAAGATTGTGACCACAATAGATGATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAAATGCGAAAAAAGGCTAAAAAGGCAGCTCAAGGCTTTGTTGGGAAGGAAGGACCCGAGGAAGTCGAGGAGGATTCTAAAGCACCTGAGCAAGATGATTGTAGTAATGATATGAAACTGACTGTAGAGTCCAGTGAAGGTAAACCTAATAATCTTGTGAATAAAGATGAATCAACAAAGGCTTCTGAAACTAAGGATGCTCCACAAGGAAGTGGTCGTAGGAGGGTTAGCAGTTCTACAAGAAAAAAGTTGCTCGCAGCTGTTGATCTCAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAAACGAGGCAGTATCGGTGTCCCGAGGTTATTCTGGGATCCAAATACTCAACTCCAGCAGATCTATGGTCTTTTGCTTGCATTTGCTTTGAGCTTGTCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCCCGGGACTTTTTCAACAGATCTGGTGATTTGAGGCACATCCGCCGGCTGCGTTTCTGGCCTCTTAATAAGGTGCTGAAAGAGAAGTATGATTTCAGTGAGCAAGAAGCAAATGACATGGCCAATTTCCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGTCTTAATCATCCATGGTTCAGTGCTGGTCCTCGGACGCTGGAACCCTCGTTGACTACTGCGCAACCTGATGCTATAGATGTAGAAATGTCGGAAAGGATGAAGAGGGAAAAAGCTGAGCTGGAGGCTGTGGAAGTTGGTGTGGAAAACATATCTATCAGTGGAACTCCAAAGCCACTCAAAGAGTCCCAACCAATAAGGTCATCAAAATAG 1632 0.44 MAEDRNEESDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKLRYVALKIQKSAQHYTEAAMDEIKILKQIAGGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILAGLDYLHRELSIIHTDLKPENVLLLSPIDPSKDLSKSGVPLVLPNTKAKTLPKIVTTIDDKSLNGDLTKNQKKKMRKKAKKAAQGFVGKEGPEEVEEDSKAPEQDDCSNDMKLTVESSEGKPNNLVNKDESTKASETKDAPQGSGRRRVSSSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRSGDLRHIRRLRFWPLNKVLKEKYDFSEQEANDMANFLVPLLDFVPEKRPTAAQCLNHPWFSAGPRTLEPSLTTAQPDAIDVEMSERMKREKAELEAVEVGVENISISGTPKPLKESQPIRSSK* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0105 543 PANTHER SERINE KINASE-LIKE PROTEIN 8 540 - -
Lan3g0105 543 ProSiteProfiles Protein kinase domain profile. 40 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0105 543 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Lan3g0105 543 Gene3D Transferase(Phosphotransferase) domain 1 123 481 - -
Lan3g0105 543 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0105 543 Pfam Protein kinase domain 317 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0105 543 SMART serkin_6 40 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0105 543 MobiDBLite consensus disorder prediction 218 306 - -
Lan3g0105 543 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 540 - -
Lan3g0105 543 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Lan3g0105 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lan3g0105 543 MobiDBLite consensus disorder prediction 268 285 - -
Lan3g0105 543 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Lan3g0105 543 MobiDBLite consensus disorder prediction 245 267 - -
Lan3g0105 543 CDD STKc_SRPK 29 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0105 Lan-Chr3 739114 743750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0105 1 531 EF-hand Containing Proteins AT5G22840 68.991 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lan3g0105 Pkinase 4.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0105 K08832 - gmx:100791829 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2029 6 31029009 31033574 Lan3g0105 3 739114 743750 LSH
Lan10g0157 10 1020938 1024260 Lan3g0105 3 739114 743750 LSH