Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0099 ATGATTTCAAGGAGCTTCCATCAAGGGTTTCAGGTGTTTCCTTTGACCGAAGAAGATTTGGTGTCATCAAATGTTGAAGTTGTTAACTCTGGTGGCTCAGGTTCTTCTTCATACCCTAGTTCCCTTCTCTTTAATCTCTCTATTCTGAAGGACAAGGTTAGTCAAGTTCAGACCCTAGTTGGTGTTATTCTCTCCCCAAATCAGAGTTTACCCGATTCAACTTCCATGGCTATATCAAGCATGATCTCCACAATCCATGAAATCATTGTCACTGCCACTTCAATGATGTATACTTGCCAACAAATGATGGATCCTCCAGGTACTTCAACTACTAATGCTTGCACCAAGGAATCGCAAAGTCAGCAAATTACTCAATCAAATTTGGGTAATAATGATAAAGTTGTGCTTAGGAACATAGCCTCAGATAGTAGGGAAATGTTAAGGAATACCCTTAACAGACCCCTAGATAATATTAGAAGTCAAGGTTTCTTTTCTAGTACTGAGTCTGAAGCCTTGGATTGGTTTAGTCAAACCTATAACAACAATAATTGTAGTAGTAGTAATGTTAATAAATGTAACCTTAAGGATGAAGTTGCAATCAGTGGAAACAATAATGTGTTACTAGGGGATCATGGAAATGATGAAGGCTATAAAAGAGGGCTTAGTCCTTCACCAAAGAACCATGATATAGTTGAACTGAAAGCTGCTGATTTATTGGCTAAGTACACGCATTATTGCCAAGTTTGTGGTAAGGGTTTTAAGCGTGATGCAAATTTGAGGATGCATATGAGAGCTCATGGAGATGAATACAAGACTAGTGCTGCATTGAAAAACTCATTGGGTAGTGTTAAGCCCAACAAATATTCATGTCCTCAAGAAGGGTGTAGGTGGAACCTAAAACATGCCAAGTTTCAACCTTTGAAGTCAATGATTTGTGCAAAGAATCATTACAAGAGAACACATTGCCCTAAGATGTATATGTGCAAGAGATGTAACCAGAAACAATTCTCTGTGCTTTCTGATTTAAGGACACATGAGAAGCATTGTGGGGACCTTAAGTGGCATTGCTCGTGTGGCACTACATTTTCTAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTGGGGCACCAACCAGCTATCACTGGTTTGTGA 1158 0.3921 MISRSFHQGFQVFPLTEEDLVSSNVEVVNSGGSGSSSYPSSLLFNLSILKDKVSQVQTLVGVILSPNQSLPDSTSMAISSMISTIHEIIVTATSMMYTCQQMMDPPGTSTTNACTKESQSQQITQSNLGNNDKVVLRNIASDSREMLRNTLNRPLDNIRSQGFFSSTESEALDWFSQTYNNNNCSSSNVNKCNLKDEVAISGNNNVLLGDHGNDEGYKRGLSPSPKNHDIVELKAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALKNSLGSVKPNKYSCPQEGCRWNLKHAKFQPLKSMICAKNHYKRTHCPKMYMCKRCNQKQFSVLSDLRTHEKHCGDLKWHCSCGTTFSRKDKLMGHVALFVGHQPAITGL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0099 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Lan3g0099 385 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 383 IPR044300 GO:0010044|GO:0010447
Lan3g0099 385 Gene3D Classic Zinc Finger 230 295 - -
Lan3g0099 385 PANTHER OS08G0562300 PROTEIN 6 383 - -
Lan3g0099 385 SUPERFAMILY beta-beta-alpha zinc fingers 242 269 IPR036236 -
Lan3g0099 385 SMART c2h2final6 288 321 IPR013087 -
Lan3g0099 385 SMART c2h2final6 244 266 IPR013087 -
Lan3g0099 385 SMART c2h2final6 326 348 IPR013087 -
Lan3g0099 385 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0099 Lan-Chr3 684321 685928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0099 41 381 C2H2 Transcription Factor Family AT5G22890 49.014 1.37e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0099 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0099 - - gmx:100802769 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0154 10 999674 1001156 Lan3g0099 3 684321 685928 LSH
Lan3g0099 3 684321 685928 Lan7g0328 7 2209947 2211035 PCT
Lan7g0328 7 2209947 2211035 Lan3g0099 3 684321 685928 PCT