Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0098 ATGAACATGGTTATGGAGGAACAACTTGTGGAGTTGTCTCATAACAACAACGATGCCAACCATGTTGTCAAGGGAAAACGCACCAAGAGGCAGAGACCTTTGTCCCCTTGTGCCGTTGCTGCCACCGCCGTCACTTCTAGTTGCTCAAGTGCTACTTCCGGCGCCGGTGATCATGGGTCGACGTTTTCTTCTCCCACAACCACTTTTGATAAAACCCGTAACGAAGAGGAAGACATGGCTAATTGTTTGATTCTCTTGGCCGGAGGAAAACGAGAAGGGAATGATGCTCGAAACAACAAAAACATGACTATAGCCCCGACCACAAATACAACCATAACTGCAACTGCGACCACAATTACGACTACAACAACAAAAATTGGTTTTTATGATTATGAGTGCAAGACATGCAACAAGACATTCTCTTCCTTTCAAGCACTTGGTGGACACATGGCTAGCCACAAAAAGCCAAAGATGACTCTAGAGGAAAAGAAACTACCACCATCACTCTCAAGTTCAGGAATTTTCAAGATCAAAGAAGCAAATCAAACCCATATCAAAAGTAGCCCTCAAATTCCAACTTCCCTTCAATTAGGTTGTCCTAACAATAAAACTTTTGATGGAAACAAATCCAAGTTTCATGAATGTTCTATTTGTGGGGCAGAATTCACATCTGGTCAAGCTTTGGGTGGCCACATGAGAAGGCATCGAACATCTACAAATTCTAGAACTAATACTAGTACTAAGACAAGTTTTGATGCCACTTCCACCACCATAGAAGTTAAGCCCAGAAATGTTCTAGAATTTGATCTTAACCTTCCAGCACCAGATGAAGATATTAGTGATTCCAATTTTCAGTTTACGACAACCTCAAAATCTATGGTGCTTCCGGCTATGGTGGGTTGTCGTTATTAG 912 0.4211 MNMVMEEQLVELSHNNNDANHVVKGKRTKRQRPLSPCAVAATAVTSSCSSATSGAGDHGSTFSSPTTTFDKTRNEEEDMANCLILLAGGKREGNDARNNKNMTIAPTTNTTITATATTITTTTTKIGFYDYECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGHMRRHRTSTNSRTNTSTKTSFDATSTTIEVKPRNVLEFDLNLPAPDEDISDSNFQFTTTSKSMVLPAMVGCRY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0098 303 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Lan3g0098 303 SMART c2h2final6 131 153 IPR013087 -
Lan3g0098 303 SMART c2h2final6 213 235 IPR013087 -
Lan3g0098 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Lan3g0098 303 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 303 - -
Lan3g0098 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Lan3g0098 303 Gene3D Classic Zinc Finger 199 264 - -
Lan3g0098 303 Gene3D Classic Zinc Finger 108 187 - -
Lan3g0098 303 SUPERFAMILY beta-beta-alpha zinc fingers 131 235 IPR036236 -
Lan3g0098 303 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Lan3g0098 303 MobiDBLite consensus disorder prediction 239 253 - -
Lan3g0098 303 PANTHER ZINC FINGER PROTEIN ZAT5 3 303 - -
Lan3g0098 303 MobiDBLite consensus disorder prediction 229 253 - -
Lan3g0098 303 MobiDBLite consensus disorder prediction 50 74 - -
Lan3g0098 303 MobiDBLite consensus disorder prediction 50 69 - -
Lan3g0098 303 Pfam C2H2-type zinc finger 131 156 - -
Lan3g0098 303 Pfam C2H2-type zinc finger 213 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0098 Lan-Chr3 677907 679108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0098 17 303 C2H2 Transcription Factor Family AT2G28200 41.694 8.44e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0098 zf-C2H2_6 7.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0098 - - gmx:100788646 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1913 6 30108517 30109343 Lan3g0098 3 677907 679108 LSH
Lan3g0098 3 677907 679108 Lan7g0326 7 2198645 2200458 PCT
Lan3g0098 3 677907 679108 Lan8g1638 8 23349539 23350951 PCT
Lan3g0098 3 677907 679108 Lan13g0408 13 2806499 2807657 PCT
Lan7g0326 7 2198645 2200458 Lan3g0098 3 677907 679108 PCT
Lan8g1638 8 23349539 23350951 Lan3g0098 3 677907 679108 PCT
Lan13g0408 13 2806499 2807657 Lan3g0098 3 677907 679108 PCT