Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0097 ATGTTCCAATTAACTATGGATGCAATGCATAATCTGATGCACAATAATGATCATGAGCTACATGATCTCATTGATGATCTCAACTTTGATCAGTTTATCAATTCAATCCATGGTGAAAATGAAGATCTCATTTGTAACTTTGGTTCTGACCTTAACAATGATTGCTTCATTGATAACCATATATTTGATCATGAGACTAATGATAATAATAATAATATTGTTGTGAATGTTCATGATCCAATTCTAAGCTCTACATTGAGCTCCCTCTCTTATTTTAATGGGAAGCTTATGGGAGAAGGAGAAGAAGAAAATGATGGAGTGGATTCTAGTTCAGCAGCAACAACTACGACTGAAACTACTACCAATGCAAAATCGAAGCAAAATGCCGATAGGTCAAAAACTCTCATTTCTGAGAGGAGAAGGAGAGGTCGAATGAAGGACAAACTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATAATAGGAGATGCAGTAGAATATGTGCATGGGCTTCAAGCACAAGCTAAGAAGCTGAAATCTGAGGTTTCAGGACTTGAAACATCACTATTAGTATCAGAAAAATATGAAGGATCAATTAACAACTCCATAATGGTTCATGCCACCTACAACAACCATTCAATATGCAAGAAGATCTTGCAGATGGACATGTTTGAAGTTGAAGAAAGAGGATATTATGCAAAAATAGTGAGCAATAAAGGAGAAGGAGTGGCTGCATCACTTTACAAGGCTCTTGAGTCTCTTACAGGATTCAATGTTCATAATTCAAACTTGGCTACAGTTTGTGACAGTTTTCTACTAACATTTACATTGAATGTGGAAGGTTCTGACCCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTTACTGGCGCTCTTGTAAACCAAGGCTTTGAAGTCATGCCATTTTTCCATGCTCAACTTTGA 966 0.3675 MFQLTMDAMHNLMHNNDHELHDLIDDLNFDQFINSIHGENEDLICNFGSDLNNDCFIDNHIFDHETNDNNNNIVVNVHDPILSSTLSSLSYFNGKLMGEGEEENDGVDSSSAATTTTETTTNAKSKQNADRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVEYVHGLQAQAKKLKSEVSGLETSLLVSEKYEGSINNSIMVHATYNNHSICKKILQMDMFEVEERGYYAKIVSNKGEGVAASLYKALESLTGFNVHNSNLATVCDSFLLTFTLNVEGSDPEINLPNLKLWVTGALVNQGFEVMPFFHAQL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0097 321 MobiDBLite consensus disorder prediction 97 138 - -
Lan3g0097 321 SMART finulus 135 184 IPR011598 GO:0046983
Lan3g0097 321 MobiDBLite consensus disorder prediction 107 130 - -
Lan3g0097 321 Pfam Helix-loop-helix DNA-binding domain 136 179 IPR011598 GO:0046983
Lan3g0097 321 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 315 - -
Lan3g0097 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 194 IPR036638 GO:0046983
Lan3g0097 321 Gene3D - 120 195 IPR036638 GO:0046983
Lan3g0097 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Lan3g0097 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 315 - -
Lan3g0097 321 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0097 Lan-Chr3 666902 668485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0097 6 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.307 2.36e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0097 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0097 - - gmx:100805451 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1916 6 30122438 30124736 Lan3g0097 3 666902 668485 LSH
Lan10g0153 10 991842 994548 Lan3g0097 3 666902 668485 LSH