Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0094 ATGCAGAAATCTGGCTATGGCTCCGATGGAATATACAAATCAGTGAGACCTGAAATTACTCTCCCTAACACCCATTCTCTCGTTCATCATCTCTTCACTAAAGTTTCTTCTTTTCCTTCCAAACTTGCTCTCATTGATGCTGATTCTAACCTCACTCTCACCTTTTCCGAACTCAAATCCTTAACTGTTAAACTCTCTCATGCTTTCATTCACTTAGGCCTCAACAAAAACGACGTCGTTCTCTTCCTTGCTCCTAACTCCATCTACTACCCTGTTATCTTTCTTGCTGTTACCGCTATCGGAGCCATAGCCTCCACCGTTAACCCAACCTACACCAACGTTGAAGTTTCCAAGCAAGTTAAGGACTCAAACCCTAAGCTTATTATCACAGTGAGTGAATTGTTGGATAAAGTTCAAAATTTGAACCTACCCACTGTGATTATTGGTTCACATAATGGTGGGTCGAGTTCAAAGATTATTTCTTTGGAACAATTGCTTGATGGGTCTGATTACCCGACAGAGTTTCCGACCAATGTTAACGTTAAACAAAGCGACACGGCGGCGTTGTTGTACTCTTCCGGCACCACCGGTGTAAGCAAGGGTGTGGTTCTGACTCACGGGAATTTCATTGCAGCGTCGGTTATGATGGGACTGGATGATGAACTAGCGGGTCGAATGCATGATGTGTTTTTATGTGTTCTTCCAATGTTTCATGTTTTTGGGTTAGCAGTGATAACATATTCGCAGCTTCAAAGAGGGAATTGTGTAGTGTCTTTGAAAAGGTTTGAGTTTGAATTAGTTTTGAAAACAATAGAGAAGTATAGAGTAACACATTTGTGGGTTGTGCCTCCTATTATAATTGCTTTGGCCAAACATGCTTTGGTTGATAAGTATGATCTTAAGTCATTGATTCATATTGGTTCTGGTGCTGCTCCTCTTGGCAAAGAGTTGATGCATGAATGTGCCTCACGTTTCCCTCAGGCTACTGTTTGTCAGGGGTATGGTATGACTGAAACTAGTGGGGCTATTTCTGTGGAGAATCCAAGGACAGGGGTTCGGAATACTGGCTCAGCAGGAATCCTTATTTCCGGGGTCGAAGCTCAAATCGTCAGTGTCGATACGTTGAAGCCTCTCCCTCCTACACAGGTGGGAGAGATATGGGTTCGCGGTCCTAATATGATGCAAGGTTATCACAACAATCCAGAGGCCACAAGATCGACCATAGATGAAAAGGGGTGGCTACATACAGGAGATCTCGGATATTTCGATGAGGATGGGAATCTTTATGTCGTTGACCGTATCAAGGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCGGAACTTGAAGGGCTTCTTGTTTCTCACCCAGAAATACTCGATGCTGTTGTCGTCCCATTTCCTGATGCTGAGGCTGGCGAGATTCCGATTGCATATGTTGTTCGATCACCCAGCAGTTCAATTACTGGGGAAGATATTCAGAAGTTTATTGCTAAACAGGTTGCACCATATAAAAGATTGAGAAGGGTGACATTCATCAACTCTGTTCCTAAGACAGCATCAGGAAAAATTCTCAGAAGAGAGCTTATTGACAAAGCAAGATCCAAAATATAA 1617 0.4292 MQKSGYGSDGIYKSVRPEITLPNTHSLVHHLFTKVSSFPSKLALIDADSNLTLTFSELKSLTVKLSHAFIHLGLNKNDVVLFLAPNSIYYPVIFLAVTAIGAIASTVNPTYTNVEVSKQVKDSNPKLIITVSELLDKVQNLNLPTVIIGSHNGGSSSKIISLEQLLDGSDYPTEFPTNVNVKQSDTAALLYSSGTTGVSKGVVLTHGNFIAASVMMGLDDELAGRMHDVFLCVLPMFHVFGLAVITYSQLQRGNCVVSLKRFEFELVLKTIEKYRVTHLWVVPPIIIALAKHALVDKYDLKSLIHIGSGAAPLGKELMHECASRFPQATVCQGYGMTETSGAISVENPRTGVRNTGSAGILISGVEAQIVSVDTLKPLPPTQVGEIWVRGPNMMQGYHNNPEATRSTIDEKGWLHTGDLGYFDEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVVPFPDAEAGEIPIAYVVRSPSSSITGEDIQKFIAKQVAPYKRLRRVTFINSVPKTASGKILRRELIDKARSKI* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0094 538 CDD 4CL 21 530 - -
Lan3g0094 538 Gene3D - 9 435 IPR042099 -
Lan3g0094 538 Pfam AMP-binding enzyme 34 440 IPR000873 -
Lan3g0094 538 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Lan3g0094 538 SUPERFAMILY Acetyl-CoA synthetase-like 24 536 - -
Lan3g0094 538 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 537 - -
Lan3g0094 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Lan3g0094 538 Gene3D - 436 537 IPR045851 -
Lan3g0094 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0094 Lan-Chr3 654557 658274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0094 1 538 Monolignol Biosynthesis Gene Families AT4G05160 67.523 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0094 K01904 - gmx:100797843 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0094 3 654557 658274 Lan8g1649 8 23464944 23468706 PCT
Lan8g1649 8 23464944 23468706 Lan3g0094 3 654557 658274 PCT