Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0092 ATGGTATCTGACGCCAGCAAGAAGAAGGCTGCACAGAAGAAAGCTGCGGCGGCGGCTAAGAGAGGAGGCAAGGCGGCAGCAGCAGCAGCAGCCGCTTCATCTAAGGCGGCGTCTGAGGTTGATAAGATCGCCAATGGAATCGGTGATATTCAGATATCTGATCGGAATTGTACCGGTGTTCTATGCTCGCATCCCCTTTCTAGGGATATTCGGATAGAGTCTCTCTCAGTTACTTTTCATGGACATGATCTCATAGTTGATTCCGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGTTTAAATGGTTGTGGAAAATCTACCCTGCTTACAGCAATAGGTTGCAGAGAGCTTCCCATTCCAGACCACATGGATATATTTCACCTTTCTAGGGAAATTGAAGCCTCTGATATGTCTGCATTGGAGGCTGTCATGAACTGTGATGAGGAAAGGTTGAAATTGGAGCAAGAAGCTGAAGCTTTGGCGGCACAGGATGATGGGGGTGGTGAAGCTCTTGAGCGGGTTTATGAACGGTTGGAAGCCATGGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAGATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTCTAGCTCGAGCCCTATTTATGAAGCCAACCATTCTTCTACTTGATGAGCCAACCAATCACCTTGATTTGGAAGCCTGTGTATGGTTGGAGGAGAATTTGAAGCATTTTGACCGTATTCTGGTTGTAATTTCACACTCCCAAGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGCTCTACACTGGCAACTATGATCAGTATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCATCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCAGCAAAACTTGCTCGTCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGTCTTACAGATAAGGTATCAAGGGACAAAGTCTTGGTATTCCGCTTTGTTGATGTAGGAAAACTCCCCCCACCCGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCCGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATCGCTCTTGTTGGACCCAATGGAGCCGGGAAGAGTACCTTACTGAAGCTAATGACAGGTGATTTGGTTCCATTAGACGGCATGGTAAAGCGCCATAATCACCTTCGAATTGCACAATATCACCAGCACTTGACCGAAAAGCTTGACATGGAAATGTCCGCTCTCCTGTTTATGATGAGAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCAATTGGCAAATTTGGTCTGACCGGTAAAGCACAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGGGTGGTATTCGCATGGTTAGCTTATAGACAGCCTCAGATGCTACTATTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTGATCAAAAAGTGACTAAATGGGATGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCTGGTTTATCTGACTGA 1791 0.4511 MVSDASKKKAAQKKAAAAAKRGGKAAAAAAAASSKAASEVDKIANGIGDIQISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIFHLSREIEASDMSALEAVMNCDEERLKLEQEAEALAAQDDGGGEALERVYERLEAMDAATAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKHFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTDKVSRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPLDGMVKRHNHLRIAQYHQHLTEKLDMEMSALLFMMREYPGNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTKWDGDIMDFKKHLKAKAGLSD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0092 596 Coils Coil 146 166 - -
Lan3g0092 596 Pfam ABC transporter 281 354 IPR032781 -
Lan3g0092 596 Gene3D - 347 594 IPR027417 -
Lan3g0092 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 317 IPR027417 -
Lan3g0092 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
Lan3g0092 596 CDD ABCF_EF-3 381 573 - -
Lan3g0092 596 PANTHER - 1 596 - -
Lan3g0092 596 Gene3D - 70 334 IPR027417 -
Lan3g0092 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 - -
Lan3g0092 596 SMART AAA_5 94 296 IPR003593 -
Lan3g0092 596 SMART AAA_5 406 594 IPR003593 -
Lan3g0092 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Lan3g0092 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
Lan3g0092 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Lan3g0092 596 CDD ABCF_EF-3 70 287 - -
Lan3g0092 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Lan3g0092 596 Coils Coil 288 308 - -
Lan3g0092 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 577 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0092 Lan-Chr3 640509 645002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0092 381 576 Calmodulin-binding Proteins AT2G36910 25.991 3.30e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0092 K06185 - pvy:116144971 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1925 6 30191409 30196147 Lan3g0092 3 640509 645002 LSH
Lan10g0148 10 943371 948073 Lan3g0092 3 640509 645002 LSH