Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0089 ATGGATTCTTGTTCTAACACCTCAAAAACAAAGAGTCCTCGTACAAGATCTAACAAGAAGGATCGTCATAGAAAAGTTGAAGGACGAGAACGTCGTGTTCTTTTGTCAAAACCTTGTGCTGATCGTCTTTTCAATCTCACTGATCAACTTGGTCATAAGACATGTGGTGAAACCATTGAGTGGCTTCTTCAGCATACAGAAAAAGCGATTATTGCTGCAACTAGTTCTGGTATTTCACCTTCAACCAACAACAACAATAATGCTATTGCTACCTCTTCAGTTGGTGTTGTTCAGAACCAAAATGTGAGTGGTGTACAAGGAGAAGAAGATGATCTTATTATGGAAAACCCTTATTTTCAACTATCTGAGAATCACATTGCATTGCTCAAATAA 393 0.3791 MDSCSNTSKTKSPRTRSNKKDRHRKVEGRERRVLLSKPCADRLFNLTDQLGHKTCGETIEWLLQHTEKAIIAATSSGISPSTNNNNNAIATSSVGVVQNQNVSGVQGEEDDLIMENPYFQLSENHIALLK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0089 130 ProSiteProfiles TCP domain profile. 19 73 IPR017887 -
Lan3g0089 130 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 10 100 - -
Lan3g0089 130 Pfam TCP family transcription factor 18 99 IPR017887 -
Lan3g0089 130 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 100 IPR005333 GO:0003700
Lan3g0089 130 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0089 Lan-Chr3 615935 616327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0089 3 81 TCP Transcription Factor Family AT1G69690 54.430 4.74e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan3g0089 TCP 6.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0089 - - lang:109342241 232.646