Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0088 ATGAGCAGCTCAAGGCTTGAATCTCATTTAGCACAACAAATTCGGCGCGATAAGTTGAGAATCCAGGACAGTTCCCATCATAATCTACAAGAATTCCTTAACAATAACCCAGGACAATCGTCGTTACACCCCGGGTTCAACTTAGATCAAGTTAGGAATGTTAGAAATGCCAGCATACTTGTTGATGAACCTGTAACTGGTTATTCTTCATCAGAAATGGTTAATTTTTCAAATCCTTTGTCTGCTCCAAGGAACAACAATTCATTGCAGTGTCAAGAACTAGGAGCATCTGAACCTGCTATTAAAGTAATGATGCATCAGTTTCCAAGTTCATCTATCAGTTTGGGAAATTGGAGAAACAGTGCCACTCATCAAGGTGTTGATTGGAATGTTTTAAATTATGCAAGCAGTTCTATGTCCAGTGAAAGAAATCAAAACTCTTTTTTGGCTTCTGAGATCAATAATAACGTGTCTTCTAATTACCAGCACTTTGGAAAGCCTTGTTTCAATGAACTCACAGAAACACAATCTTCTTCTCTTAGTAGAGAAATTCATAAGAAATTAGGTGTAAATGTAATGCATCATAATCCTTCTTCATCATATCAGAATGCTTTGCAGGATATTGTGAAATCTTCAGCTTCTATTAGCGCCTGCAATGGTTCAGACATGGCTTCATTGATGCAGCAAACTGGTCAAAACATTTGGGTCAGTAATGCAAATGAACTTGCACAACTTCAACCAAGTTATTTAAATCAACAAAATCAGCAATCACATTTCACATGTGGTAATTTGTGGACTAATAAACCTATCCCAAGTGATTCTACTCCTCAGAGTTTGTCCTTGTCACTTTCATCAAATTCACAATCCAAGCCTTTTGTTTCTCATTTTGAAGAGGCTTCTGCTTCTGCTTCTGCATTTGCATCAGATCATGGCATTTCTAAGGATCCTCCTAAACATGTGAAACCAACCATCATTTCTAGAGATTGTGGTAAATCTCCACTTCAAGACTATGTAAGGATATCACCTAATTCAAACAGTACAAGTTATCAAAATGTGGGTCCTCTTGGCCCTTTCACTGGTTATGCTACTATTCTCAAGAGTTCAAGATTCTTAAACTATGCTCAACAACTGTTACAAGAGTTCTGCTGTGTTTCTGATCCAAGATTTGCAAATGCATTTGATGTTCCAAATAGGGTCTCTGAAGAAGTTAGTGCCTCTACTTCTACTGATGCTGTCATTGAAACTAGAGGGGTTGCTCCAAAAGGTGGTAACTTAGGTTCTTCATCTTCTATGTTCTATAGGGCAAATGAAAATATCACTGAAAGGGTAACTGAGAGTAGCTTTGGTTTTTCTCCACAACCTGATTATCAACAGAAGAAAGCAAAGTTACTATACATGCAAGAGGAGGTTGGCTGGAGATACAAGCAGTACCATCATCAAATGCAAATGGTTGTTTCATCCTTTGAGTCAGTAGCGGGTCTTAGTTCGGCTACACCTTATGTTTCCTTGGCTCTCAAGTCAATATCAAGACACTTCAGGTGCCTTAAAAATTTGATCTCGGATCAGCTTAAGCTTATAAGTGAAGTCTTGGGAGAGGACTTGTCCATTCCAACCACCGGTACTAGTTATAAAGTCGACAATAATATCACAAATCCAAGGTCCGGGGACCAAAGATTTCAAAAGAACAAAGGTATCAGGAATAACAAGGCCCTTCTTGAACCCCAACAACATGTGTGGAGGCCCCAGAGAGGCTTGCCAGAACCTGCTGTGGCAATCCTTAAAGCTTGGTTATTCGAGCATTTTCTTCATCCTTACCCCACGGATAATGATAAGCACATGTTGGCGACTCAAACAGGTCTGTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGCGTCCGAGTTTGGAAGCCGATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCATAACAAGTGACAACCAAAACACTAATGAAAATGAAAGAACTGAAGGTGGTACCAGAAACCCTAGAATGGATAAACCTTTGAGCAAGTTCGGCATGTACTCAATCCATGAAAGCCAATTCCAGTGCATGGAAATGGGTTCAACCATAGCCGACGAAAGCGGCTTAAATCATGAAATTCAACAATGGAGTCAAGAGAAGCGGTCGAAGTTGGAATTCCGGCTTAGTAACAACTCAAGCATGCATGGGTCAATGACGGGTTTTTTGCCTTACCGACATCGAGGTGGAGTTGAGGTTGAAGGACTTGGATCTGTGTCACTAACATTGGGTCTTAGACATGGTGTTGAAGGTGTACAAAACCAACAACAATTACAAGAGGAACAACTTATACATCATTTTGGAGGGCATATATATGATCCTTGA 2373 0.3987 MSSSRLESHLAQQIRRDKLRIQDSSHHNLQEFLNNNPGQSSLHPGFNLDQVRNVRNASILVDEPVTGYSSSEMVNFSNPLSAPRNNNSLQCQELGASEPAIKVMMHQFPSSSISLGNWRNSATHQGVDWNVLNYASSSMSSERNQNSFLASEINNNVSSNYQHFGKPCFNELTETQSSSLSREIHKKLGVNVMHHNPSSSYQNALQDIVKSSASISACNGSDMASLMQQTGQNIWVSNANELAQLQPSYLNQQNQQSHFTCGNLWTNKPIPSDSTPQSLSLSLSSNSQSKPFVSHFEEASASASAFASDHGISKDPPKHVKPTIISRDCGKSPLQDYVRISPNSNSTSYQNVGPLGPFTGYATILKSSRFLNYAQQLLQEFCCVSDPRFANAFDVPNRVSEEVSASTSTDAVIETRGVAPKGGNLGSSSSMFYRANENITERVTESSFGFSPQPDYQQKKAKLLYMQEEVGWRYKQYHHQMQMVVSSFESVAGLSSATPYVSLALKSISRHFRCLKNLISDQLKLISEVLGEDLSIPTTGTSYKVDNNITNPRSGDQRFQKNKGIRNNKALLEPQQHVWRPQRGLPEPAVAILKAWLFEHFLHPYPTDNDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGITSDNQNTNENERTEGGTRNPRMDKPLSKFGMYSIHESQFQCMEMGSTIADESGLNHEIQQWSQEKRSKLEFRLSNNSSMHGSMTGFLPYRHRGGVEVEGLGSVSLTLGLRHGVEGVQNQQQLQEEQLIHHFGGHIYDP* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0088 790 ProSiteProfiles 'Homeobox' domain profile. 576 639 IPR001356 GO:0003677
Lan3g0088 790 SUPERFAMILY Homeodomain-like 581 645 IPR009057 -
Lan3g0088 790 Pfam Homeobox KN domain 596 635 IPR008422 GO:0003677|GO:0006355
Lan3g0088 790 Pfam Associated with HOX 364 520 IPR006563 -
Lan3g0088 790 SMART HOX_1 579 643 IPR001356 GO:0003677
Lan3g0088 790 Gene3D - 582 644 - -
Lan3g0088 790 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 765 - -
Lan3g0088 790 MobiDBLite consensus disorder prediction 652 676 - -
Lan3g0088 790 MobiDBLite consensus disorder prediction 307 326 - -
Lan3g0088 790 SMART prehox3 359 521 IPR006563 -
Lan3g0088 790 CDD homeodomain 579 640 IPR001356 GO:0003677
Lan3g0088 790 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 43 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0088 Lan-Chr3 601805 607056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0088 302 665 Homeobox Transcription Factor Family AT5G02030 41.902 1.15e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan3g0088 POX 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0088 - - gmx:100790583 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1928 6 30237595 30243864 Lan3g0088 3 601805 607056 LSH