Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0085 ATGTCTAAGGGTATTGCTAATATGAAGGACTCTTGGTTTTCCGACAATAATTTTAACGGTCTCCCGGATGAGGTTTTTAATGATGTCACCAACTTCTTTGATTTCCCCTTGGAAGATGTGGAAACCGATGTGGAGGAAGACTGGGATGCTCAGTTTAAACGGCTTGAAGAGCCGTGTTTTGATGTTTTTCAAGTAACATCATCTGGCCTGTGTGGAAAAACTGAGCATAATCTGAGGAGTTTCCCTACTTCTTGTAATGGAGTTCCGCAAATAAAGCAGCTTGCAAAAACTGCTGGACCTACATATGGAAAAACCATTCCCAAGCCGGATGTATCTTTCACCGGAAAACATTCGCATCAATTCCAAACCAACAGTCCAGTTTCAGTTTTTGAAAGCAGTAGTTCTTCCTCAGCTGAGAATTCCAATGTTGATCTACCTACCCTCAGCGTCAAGCGAACTCGAAGTAAACGCCAGCGTCTTTCAAGCTCCAGTCCTGTATTCTCAATTTCTTTCAACCCTACTTTGCATAAATATCCAAAGACAACTGCCTCTGAATCCGATACAAGTCTTGCTGGAGAAAGGATCTCTTCCTGCTATCAGCTCAAGTTGGGAAACAAAGTTGAGAAACAAACGGAAAAGGATCTTTCCCTGCTTTCAGATCAAGTTGTGATCAAGACATCCTCATCAAAGGGGCCAGTTGCGACCATAAAGTGCATGCATTGTGACGTGAAAAAGACGCCACAATGGAGAGAGGGACCTATGGGCCCGAAGACCTTATGCAATGCTTGTGGTGTTCGTTACAGGTCTGGCCGCCTCTATCCTGAATATCGGCCTGCAGTTAGTCCCACATTCGTACCGTCACTGCATTCAAACAGTCACAAAAAGGTCGTAGAAATGAGAAGCAGAGACAAGCCGGAGGCGGTTTAG 927 0.4444 MSKGIANMKDSWFSDNNFNGLPDEVFNDVTNFFDFPLEDVETDVEEDWDAQFKRLEEPCFDVFQVTSSGLCGKTEHNLRSFPTSCNGVPQIKQLAKTAGPTYGKTIPKPDVSFTGKHSHQFQTNSPVSVFESSSSSSAENSNVDLPTLSVKRTRSKRQRLSSSSPVFSISFNPTLHKYPKTTASESDTSLAGERISSCYQLKLGNKVEKQTEKDLSLLSDQVVIKTSSSKGPVATIKCMHCDVKKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAVSPTFVPSLHSNSHKKVVEMRSRDKPEAV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0085 308 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 302 - -
Lan3g0085 308 MobiDBLite consensus disorder prediction 288 308 - -
Lan3g0085 308 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Lan3g0085 308 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Lan3g0085 308 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Lan3g0085 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 295 - -
Lan3g0085 308 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Lan3g0085 308 MobiDBLite consensus disorder prediction 113 163 - -
Lan3g0085 308 MobiDBLite consensus disorder prediction 115 149 - -
Lan3g0085 308 MobiDBLite consensus disorder prediction 293 308 - -
Lan3g0085 308 Gene3D - 234 282 IPR013088 GO:0006355|GO:0008270
Lan3g0085 308 PANTHER GATA TRANSCRIPTION FACTOR 26 302 - -
Lan3g0085 308 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0085 Lan-Chr3 580553 583322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0085 21 303 C2C2-Gata Transcription Factor Family AT1G08000 40.411 3.06e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan3g0085 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0085 - - lang:109342753 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0085 3 580553 583322 Lan8g1661 8 23572820 23576376 PCT
Lan3g0085 3 580553 583322 Lan13g0383 13 2588202 2591459 PCT
Lan8g1661 8 23572820 23576376 Lan3g0085 3 580553 583322 PCT
Lan13g0383 13 2588202 2591459 Lan3g0085 3 580553 583322 PCT