Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0084 ATGCCCATGAAGGAATCTCAAAAGAGCTTGGATCCTGAACTATGGCATGCTTGTGCTGGTGGCATGGTTCAGATGCCACCACTTAACTCTAAAGTGTTCTACTTTCCTCAAGGGCATGCTGAACATGCACACACCAATCTTGATTTTGTGGATTCAATGAGGATTCCACCACTCATTCTTTGCAGTGTTGCAGCAGTGAAATTCTTTGCTGACCCTGAGACAGATGAAGTTTTTGCAAGGGTAAGGTTGGTTCCTTTGAGAAACGCAGAGGTTGATTATGATACTGATGGTGATTGTGCAAATGCTTCTGAGAATTCAGAAAAGTCTGTTTCTTTTGCCAAGACATTGACTCAATCTGATGCCAACAATGGTGGGGGGTTTTCAGTTCCTAGATACTGTGCAGAAACAATGTTTCCAAAGCTGGATTACTCGGCTGAGCCGCCGGTTCAGATCGTGATTGTTAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGGCATATCTATAGAGGCACGCCGCGGCGCCACTTGCTTACAACTGGTTGGAGCAGTTTTGTGAATCAGAAGAAACTTGTTGCAGGTGATTCTGTTGTGTTTCTGAGGGCTGAAAATGGTGATATTTCTATCGGAATTCGTAGGGCCAAAAGGGGAATTGGTGGTGGATCAGAAGCCCCATCAGGGTGGAGCTCTGGTGCTGGAAATTGTGGTATTGGACCTTATGGTGCATTTTCTGTTTTCTTGAGAGAGGATACCAAGATTTTGGGAAATGGTGTTGGGAATTCAAGTCCTGGTGGTGGTGTTAATTTGAGTGGAAGTGCAAAAGTGAGCTCAGAATCTGTGAGAGATGCTATGGCACTGGCTGCTACCAATAAACCATTTGAATTTGTTTATTATCCGAGAGCAAGCACCCCCGAGTTTTGCATCAAGGCTTCAGCTGTGAAGGTGGCTATGAGAATTCAGTGGTGCTCCGGGATGAGGTTTAAGATGGCCTTTGAAACTGAGGATTCTTCTAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTCGATCCTATTCGCTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAACCGGATTTACTACATAATGTGAAGCATATAAGCCCATGGTTGGTTGAATTGGTATCAAATGTGCCAGTCATTCATCTCTCACCCTTCCCTCCACCAAGGAAGAGGCTTCGGTTTCCACCACACTTGGATTTTCCCTATGATGTTCAATTTCCAATACCAATGTTTTCGGGCAACGCGGTCGGGACTAGCAGTCCCTTGCGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGAAGCCAGGCATGCTCAAATTGGAAAATCTCTTTCAGATTTCCACTTTCACAATAATAAACTCCGGTTAGGGGTGCTTCCAACTAACATTCAGCAGCTCAATTTCAATGCTGCTGGAATTTCTAATGGCAACATCACAAACCATGATAAGAGTAAAGAAAGCTTGTCATGGTTGCTGACCGATGGAAATTCTCGTAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTACTTTTCGGTCAACCAATACTAACTGAGCAACAAATTTCCAGAAGAGCTTGTGATTTGTTGTCTCAGAATTGTAGTGCTGGGAAAGATTCACCAGATGAGAACAAGGACAAAGAGAAGAGTTTTTCTGTTGACTCTCAATCTACACTTTCGGAGCAGTTTTCACCCGGAAAATCTTGTACTACTGAGTCTTGGCAGATGGGTTTGGATACTACTGGTCATTGCAAGGTTTTCATGGAGTCCGAAGATGTGGGAAGGACCCTAGACCTGACAAGTCTCGGTTCTTATGAAGAGCTTTACAGGAGACTGTCCAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGTCATGTACTCTACCGTGATGTAACCGGTGCTGTTAAGCAAATTGGAGAAGAACCATTTAGTGCTTTCAGGAATACAGCAAAAAGATTGACAATTCTGACAGACTCAGGCAGCAAAGATACAAAAAGGACTTGGATAGCAGGAACTCAGAATGCTGAGCATGGATTGGATGCACCTAATAAGACAGGTCCTTTGAGCATATTTGCTTAA 2136 0.4377 MPMKESQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDGDCANASENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISIGIRRAKRGIGGGSEAPSGWSSGAGNCGIGPYGAFSVFLREDTKILGNGVGNSSPGGGVNLSGSAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSPFPPPRKRLRFPPHLDFPYDVQFPIPMFSGNAVGTSSPLRCLSDNAPAGIQEARHAQIGKSLSDFHFHNNKLRLGVLPTNIQQLNFNAAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQMGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPFSAFRNTAKRLTILTDSGSKDTKRTWIAGTQNAEHGLDAPNKTGPLSIFA* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0084 711 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan3g0084 711 MobiDBLite consensus disorder prediction 554 589 - -
Lan3g0084 711 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Lan3g0084 711 Gene3D - 110 214 IPR015300 -
Lan3g0084 711 SMART B3_2 112 214 IPR003340 GO:0003677
Lan3g0084 711 MobiDBLite consensus disorder prediction 571 589 - -
Lan3g0084 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan3g0084 711 SUPERFAMILY DNA-binding pseudobarrel domain 106 218 IPR015300 -
Lan3g0084 711 ProSiteProfiles PB1 domain profile. 599 679 IPR000270 GO:0005515
Lan3g0084 711 PANTHER AUXIN RESPONSE FACTOR 4 688 - -
Lan3g0084 711 CDD B3_DNA 111 212 IPR003340 GO:0003677
Lan3g0084 711 Gene3D - 597 683 - -
Lan3g0084 711 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Lan3g0084 711 Gene3D - 320 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0084 Lan-Chr3 570039 573736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0084 2 681 B3 DNA Binding Superfamily AT4G30080 55.331 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan3g0084 B3 5.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0084 - - gmx:100778135 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0140 10 877054 881351 Lan3g0084 3 570039 573736 LSH
Lan3g0084 3 570039 573736 Lan8g1662 8 23586370 23589963 PCT
Lan8g1662 8 23586370 23589963 Lan3g0084 3 570039 573736 PCT