Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0079 ATGGGCAATATTAGTAGCAGTGGTCGCCGCAGACACCGGAGGAGACACCACCACCACCACCCTCCTCCTCCTCCTCCTCCTCCTCACGATGCCGTCTATGTGGGTTCTTCTGGTCGTCTTCAAAATCCAAACTTGGTTGATGGGCATGGTGTGGTTGAGCATGACAAAGCTGTGACTATCAGGAATGATGCTAATATCAAGAAAGAGACTCTTCGTATGGAACCTGATCTTCTCAACCCTCCCCATTTTCTTCTTGCTTTTACCTTTGATGCCACTGCTCCCGGATGCATTACGGTTATGTATTTCGCCAAGGAAACTTTAGATGGTAAGCTGATACCAGTTAAGGAAAGCGTGCTCAAACAAATCTCGATGCCTTTTCAGCAAGGTCTATGCCAGAAATTTAGACAACCTTCTGGAACTGGGATCGAGTTCTCGCAGTTAGAAGAAACAGGAGTAACAAAAGAAGGCGATATCGAAGTCTATCCTCTTGTGCTGAAGGCCGAGACTCGACCATCAAACCATTATGAAAATGATGGAAACCTTTCGTCTCAGATCACTTTGGCGAGTTTTGAGAAGAGAGAGCCAGGTGGGTACAAGGTCCAAGTAGTGAAACAGGTTCTCTGGGTTAATGGGAAGAGGTATGAACTACAAGAGATATATGGCATTGGCAATGCTAATGATGGTGATTTTGATGGTCATGATTCTGGTGGAGAATGTGTAATTTGCTTGTCCGAACCACGGGATATAACTGTTCTCCCTTGCCGACACATGTGTATGTGCAGTGGGTGTGCCAATCTTCTGAAAGTTCATACAGCCAAGTGTCCGATATGTCGACATCCGGTTGAGAGGCTTTTGGAAATTAAAGTAAATAATGAACCTGCTAATCAATGA 891 0.4523 MGNISSSGRRRHRRRHHHHHPPPPPPPPHDAVYVGSSGRLQNPNLVDGHGVVEHDKAVTIRNDANIKKETLRMEPDLLNPPHFLLAFTFDATAPGCITVMYFAKETLDGKLIPVKESVLKQISMPFQQGLCQKFRQPSGTGIEFSQLEETGVTKEGDIEVYPLVLKAETRPSNHYENDGNLSSQITLASFEKREPGGYKVQVVKQVLWVNGKRYELQEIYGIGNANDGDFDGHDSGGECVICLSEPRDITVLPCRHMCMCSGCANLLKVHTAKCPICRHPVERLLEIKVNNEPANQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0079 296 PANTHER - 16 293 - -
Lan3g0079 296 Pfam Zinc finger, C3HC4 type (RING finger) 237 283 - -
Lan3g0079 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 288 IPR013083 -
Lan3g0079 296 PANTHER MAHOGUNIN 16 293 IPR045194 GO:0061630
Lan3g0079 296 SUPERFAMILY RING/U-box 238 284 - -
Lan3g0079 296 SMART ring_2 239 277 IPR001841 -
Lan3g0079 296 MobiDBLite consensus disorder prediction 7 22 - -
Lan3g0079 296 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 238 278 IPR045195 -
Lan3g0079 296 ProSiteProfiles Zinc finger RING-type profile. 239 278 IPR001841 -
Lan3g0079 296 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0079 Lan-Chr3 542774 545860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0079 52 258 C3H Transcription Factor Family AT3G09770 57.407 4.47e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0079 - - gmx:100816136 415.231