Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0078 ATGATCAACAGGACTTTTTCATTTTCCAAAATGGTGGGCTGCCTTAGTTGCTTGGGAGAAACTGAAGAGGATGAGAACTCATGTAATGGTGAGGTCACTAGTAACACCACCAGTGGAGATGATAGTGACATGCACGTTCGACCTAAACGTTCGGAGGAAATTTTGAACTTCAGAGCAGAGAATGGCATGATCTGTAGGCAGTTTCCTGTTAAGGAGACTCACAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATGTTCGTGAGCATAAGATTGGTTCTGGTAGCTATGGCAAAGTGACTCTTTATCGAAGTTGCTTAGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTAATGAAGATTCGAGTTGCACCTTCTGAGACTGCCATGACTGATGTTCTACGTGAGGTATTTATTATGAAAATGCTGGGACACCCTAATATAGTCAATCTCGTTGAGGTGATTGATGACCAAGAGTCGGATCACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGATTTGTGAGGGTTCAGGTCGTTCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCTGGATTAGCATATCTTCATGCTCATAATATAGTGCATGGAGATATTAAACCTGATAATCTGTTGGTTACTCGGCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGTCAGGCTTTTGAGGATGACAATGATGTTCTTCGAAGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTCGGAGACTCACTTCAAGACACATATGATAGAATAGCCAATAATCCTTTAGTACTCCCAGATAACATTAACTCGGAGTTAAAGAACTTAATAGAAGGACTACTTTGCAAAGACCCAAGACTAAGGATGACATTGAGTGATGTTGCTGAACATAGATGGATTATTGGAGATGATGGCCCAATTTCTCAGTACTTGTGTTGGTGCAAACGCAAAAGCTTGGAGAGTGAGGACTTTATTAGTGATCAACAACCCCTATTGACTAAGTGA 1161 0.4083 MINRTFSFSKMVGCLSCLGETEEDENSCNGEVTSNTTSGDDSDMHVRPKRSEEILNFRAENGMICRQFPVKETHKLDRSEDENGNKMINEYVREHKIGSGSYGKVTLYRSCLDGKHYAIKAFHKSHLMKIRVAPSETAMTDVLREVFIMKMLGHPNIVNLVEVIDDQESDHFYMVLEYVEGKWICEGSGRSCALGEETARKYLRDIVSGLAYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDSLQDTYDRIANNPLVLPDNINSELKNLIEGLLCKDPRLRMTLSDVAEHRWIIGDDGPISQYLCWCKRKSLESEDFISDQQPLLTK* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0078 386 Gene3D Phosphorylase Kinase; domain 1 85 188 - -
Lan3g0078 386 CDD STKc_LKB1_CaMKK 97 352 - -
Lan3g0078 386 ProSiteProfiles Protein kinase domain profile. 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0078 386 Pfam Protein kinase domain 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0078 386 Gene3D Transferase(Phosphotransferase) domain 1 189 361 - -
Lan3g0078 386 MobiDBLite consensus disorder prediction 21 47 - -
Lan3g0078 386 SMART serkin_6 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0078 386 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 375 - -
Lan3g0078 386 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 23 375 - -
Lan3g0078 386 SUPERFAMILY Protein kinase-like (PK-like) 87 363 IPR011009 -
Lan3g0078 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lan3g0078 386 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0078 Lan-Chr3 536191 542055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0078 86 359 CBL-interacting serine-threonine protein kinases AT5G35410 32.117 4.54e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lan3g0078 Pkinase 2.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0078 K00908 - gmx:100776013 630.943