Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0077 ATGATACATGATGAACCCTTTTCTCTTCCTTCCAACATGAAAAACACCTTCAATATTCAACAAGTTCATGAACCAATCTCAAACCCTAGCTCTAACCCTAATTCAAATCCTTCCAAGAAAAAGAGAAGTCTACCAGGAAACCCAGATCCAGATGCAGAAGTGATTGCTCTTTCACCAAAGTCACTAATGGCAACCAACCGATTTGTATGTGAAATATGCAAAAAGGGTTTTCAGAGAGACCAAAACCTTCAGCTGCATCTACGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAAATAAACAAGAGGTGATAAAAAAGAAAGTGTACGTGTGCCCAGAGAAAAGTTGTGTGCACCATGACCCTTTTAGAGCCTTGGGAGATCTCACAGGGATAAAGAAGCACTATAGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCAACAAATGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAAAGAGTACAAATGTGAATGTGGCACTACTTTTTCAAGGAGGGATGGCTTCATAACTCATAGAGCTTTTTGTGGAGCCTTGGCTGAACAAAGTGCTAGACTCATAACTTCAGTTCCATCAGTGTTTAACTTCAGAAATGATCAAGCACCAAGAATTCCTCATAGTTTACCTGGGTTTCATCAAGAATTTAGTGGGCAAGGATCAGAGCCATTAATAGGAAATTTTGTGGATTCAGAACATGCATTGAAGCTGAGACTGCCATTATGGTTAGACCAGACTAATTCTAATGTATACTCATCAAATGAAGTAGTTCAAACAATGAACATGAACATGAACATGAACATGTCTGGCTCATCACAACAAGCACAGTGGCTGAGTTACAAGTACCCAGAAGCATCATTTCCTGCTGCTATGTCACAAGGACTGAAGCAAGAAGAAGAAGGAGAAAACAAAGGAAACTTCTCTCATCATCATCATAGCTTGAGTAGTTCTTTGTACTCTAGTGCTCAGAACTTACAAGGTGGGCCAACTCACATGTCTACAAGGATCAATGACAATGCAATCTTCAACAACAACTCTAACAATGTCTTTGGCTTGAACAATAATATTGTTGAAATGCAGAAAGTTTTCAAGCAAGGAAATCAAGAGGGACAAAACTTCAACAACATGGTGGTGAGTAGTTCATTAAATGATGCAAATTGTACTTCATTTGGGAATTTGGATCATATGGTAATGCCAACAGTAGATGAAGATCAACTAGGATTAACCAGAGACTTTCTAGGAGTTGGAGATGAAACATTAAGAACACCATTCTTGCAGCACCAACAACAACTTCACAACTTCAATCCTATTCATTCAGTACTCAACTTGCATAGCCACTTCAATAGACACCACAATATGATGAAGTAG 1416 0.3941 MIHDEPFSLPSNMKNTFNIQQVHEPISNPSSNPNSNPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEKKWKCNKCSKKYAVQSDWKAHSKICGTKEYKCECGTTFSRRDGFITHRAFCGALAEQSARLITSVPSVFNFRNDQAPRIPHSLPGFHQEFSGQGSEPLIGNFVDSEHALKLRLPLWLDQTNSNVYSSNEVVQTMNMNMNMNMSGSSQQAQWLSYKYPEASFPAAMSQGLKQEEEGENKGNFSHHHHSLSSSLYSSAQNLQGGPTHMSTRINDNAIFNNNSNNVFGLNNNIVEMQKVFKQGNQEGQNFNNMVVSSSLNDANCTSFGNLDHMVMPTVDEDQLGLTRDFLGVGDETLRTPFLQHQQQLHNFNPIHSVLNLHSHFNRHHNMMK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0077 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 445 - -
Lan3g0077 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lan3g0077 471 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Lan3g0077 471 MobiDBLite consensus disorder prediction 1 52 - -
Lan3g0077 471 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lan3g0077 471 SMART c2h2final6 110 140 IPR013087 -
Lan3g0077 471 SMART c2h2final6 145 165 IPR013087 -
Lan3g0077 471 SMART c2h2final6 68 90 IPR013087 -
Lan3g0077 471 Gene3D Classic Zinc Finger 102 193 - -
Lan3g0077 471 Gene3D Classic Zinc Finger 67 91 - -
Lan3g0077 471 MobiDBLite consensus disorder prediction 9 42 - -
Lan3g0077 471 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 26 445 - -
Lan3g0077 471 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0077 Lan-Chr3 529024 531596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0077 38 209 IDZ Gene Family AT3G45260 80.233 3.41e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0077 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0077 K25870 - gmx:100815213 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0128 10 784557 786855 Lan3g0077 3 529024 531596 LSH
Lan3g0077 3 529024 531596 Lan8g1678 8 23695828 23698021 PCT
Lan3g0077 3 529024 531596 Lan13g0374 13 2515557 2517726 PCT
Lan8g1678 8 23695828 23698021 Lan3g0077 3 529024 531596 PCT
Lan13g0374 13 2515557 2517726 Lan3g0077 3 529024 531596 PCT