Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0076 ATGGATTTGGTATCCAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGACAGGATAGTATCTATTCTCGCTGATGAACAGGTTTCCAAAATGTGGGCTAGGAAGAATGCTGTTGGAAAAGAACAAGTGGCAAAATTAGTGGATGACACATATAGAAGATTGCAGGGGTCCGGAGCCATTGATCTAGCATCAAAGGGACAAGGTGCCTCAGATAGCAGTAATGTGAATGTGAAAGCTGAAATTGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTCTTTGTGGATGTTCATTGGAAACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGCCATGTGTGGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGAAGGAACTCCTCCAGTTCCTGAGAAATTTTATTGTGAAACCTGCCGACTCAGTCGTACAGATCCGTTTTGGGTTTCAGTGGCACACCCGTTGGTTCCTGTGAGGTTGACTACAACCAGTATTCCAACCGATGGAACCAACCCAGTTCAGAGTGTGGAGAAAACATTTCAACTTACGAGAGCTGACAAGGAATTGATATCAAGGCCAGAATTTGATGTCCAGGCTTGGTGTATGCTTCTGAACGACAAAGTTTCATTCAGGATACAATGGCCACAATATACAGACCTACAGGTCAACGGCTTTTCTGTACGTGCAGTTAACAGACCTGGTTCACAATTGCTTGGAGCTAATGGCCGTGATGATGGTCCAATTATCACGCCATTTACAAAAGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATTTTCTGTTTAGGGGTCCGTATTGTTAGAAGGCGTAGCATGCTGCAGATCTTAAACATGATTCCAAAGGAGTCCGAAGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCATTTCTTGTGTTGGGGGTGGAAATGGAAGTGATAATGCTGATAGTGACAGTGACTTGGAAGTGGTTTCAGATACCTTCAGCATCAACCTTCGTTGTCCAATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCATGCATTCACATGGGTTGTTTCGATCTTGAAATTTTTGTGGAAATGAATCAACGATCCAGAAAGTGGCAATGCCCCATATGTCTTAAGAATTATGCGTTGGAGAATATCATTATTGACCCTTATTTCAACCGCATCACAAAAATGATGACAAATTGTGGAGAAGAAGTTACGGAGGTTGAGGTCAAGCCTGATGGCTCTTGGCGTGTCAAGGTTAAGGGTGAAAGTGGACGCCGAGAGTTGGGGAATCTTGCTCAATGGCACTGTCCTGATGGATCCCTCTCTGTTTCTACTGATGCAGAAGTCAAGAGTGTGGAAACTTCGAAGCTCAAACAGGATGGGGTTTCAGATAGTCCTGCTGGTTTAAGACTTGGCATCAGGAAGAATAGCAATGGAGTTTGGGAAGTCAATAAACCTGAGGGCACGAACACCTCTTCCGGTAATAGGTTGAATGAGGATTTTGGAAATCATGAACATGTGGTTATTCCAATGAGTAGCAGTTCCACAGCAAGTGGCTGGGATCGTGATGATCCTAGCGTAAATCAAGGTGGTGCTGGGCATATTGATTATTCAACTGCCAATGGGATTGAGATGGATTCTCTATGTAACAATAATGTGGATTCAGCTCATGGATATACTGCACATAACACTCCGGATCCGGTGGGTGCTGCAGAAGTTATTGTTCTGAGTGACTCAGATGAAGACAATGATATATTGGCCTCTCCTGCACTTGGGTACGGAAATAATCAAACTGGTGCTGCAGGAGATGTTTACTCTGTGCCTTCGCATGAAGTTATTGATGCATATGCAGAAGATCAGCAGCTTGGTGGAAATCCGTGCTCAAGACTTTTTAATAATGCCAATGAAGATGATTTTGGGTTGTCATCCCCCCTCTGGTCACTACCTTCTGGAACTCAGGCAAGCTCAGGATTTCAGTTATTCAGCTCTGATGTGGATGTGTCAGATGCATTGGTCCATTTGCAGCATGGTGATATTAATTGCTCCTCATCAGTCAACGGTTATACATTGGCTCCAGATACTGCTTTGGGATCTAGTGCTCTCATACCAGATTCATCTGCAGGGCGTTCTGGTGCTGAATTAAATGGTGGTTTGGTTGACAATCCATTGGCATTTGCTGGAGAAGATCCCTCGCTTCAGATTTTTCTTCCAACAAGACCAGCAGACTCGTCCATGCAGGATAAATTGGGAGATCAGGAAGATGTGTCAAATGGTATCTGCACTGAGGATTGGATTTCTCTTAGCCTTGGAGGTAGTGCCAGTGGCAGCAATGGTGATGCATCAACTACAAATGGGTTGAATTCCAGACCACAAGTTACATCCAAAGAAGGTCCGACTAATACTTCGACCGATACTGCTTCTTTGCTTCTTGGTATGAATGATGTTAGAGCTGACAAAGCAAGCAGACAAAGATCCGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTGAGGAGGAAGATATATTAG 2622 0.4359 MDLVSSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRIVSILADEQVSKMWARKNAVGKEQVAKLVDDTYRRLQGSGAIDLASKGQGASDSSNVNVKAEIDDSFQSDTKIRCLCGCSLETEPLVKCEDTRCHVWQHINCVIIPEKPMEGTPPVPEKFYCETCRLSRTDPFWVSVAHPLVPVRLTTTSIPTDGTNPVQSVEKTFQLTRADKELISRPEFDVQAWCMLLNDKVSFRIQWPQYTDLQVNGFSVRAVNRPGSQLLGANGRDDGPIITPFTKDGINKISLTGCDARIFCLGVRIVRRRSMLQILNMIPKESEGERFEDALARVISCVGGGNGSDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEIFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITKMMTNCGEEVTEVEVKPDGSWRVKVKGESGRRELGNLAQWHCPDGSLSVSTDAEVKSVETSKLKQDGVSDSPAGLRLGIRKNSNGVWEVNKPEGTNTSSGNRLNEDFGNHEHVVIPMSSSSTASGWDRDDPSVNQGGAGHIDYSTANGIEMDSLCNNNVDSAHGYTAHNTPDPVGAAEVIVLSDSDEDNDILASPALGYGNNQTGAAGDVYSVPSHEVIDAYAEDQQLGGNPCSRLFNNANEDDFGLSSPLWSLPSGTQASSGFQLFSSDVDVSDALVHLQHGDINCSSSVNGYTLAPDTALGSSALIPDSSAGRSGAELNGGLVDNPLAFAGEDPSLQIFLPTRPADSSMQDKLGDQEDVSNGICTEDWISLSLGGSASGSNGDASTTNGLNSRPQVTSKEGPTNTSTDTASLLLGMNDVRADKASRQRSDSPFSFPRQKRSVRRKIY* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0076 873 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Lan3g0076 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Lan3g0076 873 SMART PHD_3 116 166 IPR001965 -
Lan3g0076 873 Gene3D SAP domain 1 60 IPR036361 -
Lan3g0076 873 SUPERFAMILY SAP domain 1 64 IPR036361 -
Lan3g0076 873 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Lan3g0076 873 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Lan3g0076 873 SMART sap_9 11 45 IPR003034 -
Lan3g0076 873 Pfam SAP domain 14 42 IPR003034 -
Lan3g0076 873 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Lan3g0076 873 MobiDBLite consensus disorder prediction 801 873 - -
Lan3g0076 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Lan3g0076 873 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 813 - -
Lan3g0076 873 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 813 - -
Lan3g0076 873 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Lan3g0076 873 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Lan3g0076 873 MobiDBLite consensus disorder prediction 801 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0076 Lan-Chr3 514417 524418 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0076 - - aprc:113857557 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1951 6 30453127 30465397 Lan3g0076 3 514417 524418 LSH
Lan3g0076 3 514417 524418 Lan7g0285 7 1828455 1838325 PCT
Lan3g0076 3 514417 524418 Lan8g1681 8 23720187 23733356 PCT
Lan7g0285 7 1828455 1838325 Lan3g0076 3 514417 524418 PCT
Lan8g1681 8 23720187 23733356 Lan3g0076 3 514417 524418 PCT