Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0071 ATGGGTTGCTTTGGCTGCACGAGAAGATCACGCAAAAAATCCATCACAAACAATCCCACTTCTATTGATAGGATCAAAGTTGATTTGAATGAGAATGGTAGAAGGGAAGATAAAAAAGCTAAGGACGATCAACTTTCCGTGGACGCGAGGAATTTGAATATAAGAGAGGGTGTTTCGAAGGAGGTTAAACCTAATGGTTACAAGGCGCAGTCGTTTACATTTGATGAGCTTGCAGCTGCAACAGGAAATTTTAGACCAGATTGCTTTCTAGGTGAAGGAGGGTTTGGCAAAGTTTATAAGGGAAACTTGGAGAAAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTCATGGGAGTCAAGGAACTCATGAATTTTCTGTTGAAGTGTTAACACTGAGTTTGGTAGACCATCCTAATCTAGTCAAGTTGATTGGGTTTTGCGCCGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGATGTTGGGATCTTTGGAGAACCATTTGCATGATCTTAAACCCGGAAGAATACCACTTGATTGGAATACTAGAATGAAAATTGCAGCTGGTGCAGCTAGGGGTTTGGAGTACTTGCATGATAAAATGAAGCCTCCTATCATATACCGTGACCTGAAATGCTCAAACATTTTGTTAGGAGCGGGATATCATGCCAAGTTATCTGACTTTGGTTTGGCTAAAATAGGTCCAAGTGGTGATAAGACTCATGTTTCGACCCGGGTTATGGGTACATATGGGTATTGTGCCCCAGAGTATGCGATGACAGGTCAGTTAACGTTCAAGTCTGATATTTACAGCTTCGGGGTTGTTCTTTTGGAACTCATCACTGGCAAGAAAGCTATCAACCAAACAAAATCTGGCAAAGAACAAAATCTAGTTGCATGGTCAAGGCCCTTGTTCCGAGACCGGAAAAAGTTCACACAGATGATTGATCCATTGCTAGAAGGTCATTTTCCAGTGAGAGGCTTGTACCAAGCTCTTGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGTCCGGCTATAGCTGATGTGGTTACAGCTCTAAACTACCTTGCAACTCAGAAATACGATCCGCATGTTCGTTCAGTGCAATGCAGCCAATTCCACGAAAACAGCTTGTCTTCTCCGAGAATGCGAAGGAATGGTCATACACATGTTGATACTTGA 1197 0.4252 MGCFGCTRRSRKKSITNNPTSIDRIKVDLNENGRREDKKAKDDQLSVDARNLNIREGVSKEVKPNGYKAQSFTFDELAAATGNFRPDCFLGEGGFGKVYKGNLEKINQVVAIKQLDPHGSQGTHEFSVEVLTLSLVDHPNLVKLIGFCAEGEQRLLVYEYMMLGSLENHLHDLKPGRIPLDWNTRMKIAAGAARGLEYLHDKMKPPIIYRDLKCSNILLGAGYHAKLSDFGLAKIGPSGDKTHVSTRVMGTYGYCAPEYAMTGQLTFKSDIYSFGVVLLELITGKKAINQTKSGKEQNLVAWSRPLFRDRKKFTQMIDPLLEGHFPVRGLYQALAIAAMCVQEQPNMRPAIADVVTALNYLATQKYDPHVRSVQCSQFHENSLSSPRMRRNGHTHVDT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0071 398 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0071 398 CDD STKc_IRAK 90 359 - -
Lan3g0071 398 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 381 - -
Lan3g0071 398 SUPERFAMILY Protein kinase-like (PK-like) 70 380 IPR011009 -
Lan3g0071 398 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
Lan3g0071 398 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0071 398 MobiDBLite consensus disorder prediction 378 398 - -
Lan3g0071 398 Pfam Protein kinase domain 90 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0071 398 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Lan3g0071 398 PANTHER OS07G0668900 PROTEIN 1 381 - -
Lan3g0071 398 Gene3D Transferase(Phosphotransferase) domain 1 161 380 - -
Lan3g0071 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0071 Lan-Chr3 469551 472522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0071 1 363 Glycoside Hydrolase AT3G07070 58.127 2.96e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan3g0071 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0071 - - gmx:100794680 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1960 6 30532900 30536665 Lan3g0071 3 469551 472522 LSH
Lan3g0071 3 469551 472522 Lan8g1696 8 23831992 23835766 PCT
Lan3g0071 3 469551 472522 Lan13g0357 13 2349021 2352631 PCT
Lan8g1696 8 23831992 23835766 Lan3g0071 3 469551 472522 PCT
Lan13g0357 13 2349021 2352631 Lan3g0071 3 469551 472522 PCT